Submitted SNP(ss) Details: ss23145067

Submitted SNP(ss) Details: ss23145067

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd1130683
RefSNP(rs#)	rs12029632
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGAGAGCTCA AGGGCTCGCT CCACAGGGAA GGCTGGAGTG GGGGATGACT AATGCAATTA
 CCCATTTGGA ATTTAGCTTA GAAGATGA
 AAAGAAATAG AC
 Y
 AGAGGTGACA GG
 CTTAAAAATT CCTTTTTTTT TTTTTTTTGG TTTGTTCCCA ATCCTCTCCT AGTCCAGTGT
 TGGGAGAGGA GCTGCGGTAA GGAGAGTG

Submitted Frequency for ss23145067

There is no frequency submission for ss23145067.

dbSNP summary of Genotypes for ss23145067

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	C=0.75000000	T=0.25000000	C/C=0.62500000 C/T=0.25000000 T/T=0.12500000	Pr(chiSq=2.667,df=1) =0.150	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	C=0.63043481	T=0.36956522	C/C=0.47826087 C/T=0.30434781 T/T=0.21739130	Pr(chiSq=2.767,df=1) =0.100	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	T=0.64583331	C=0.35416666	T/T=0.50000000 C/T=0.29166666 C/C=0.20833333	Pr(chiSq=3.153,df=1) =0.100	Genotype Freq.

Submitted individual genotype for ss23145067

There is no individual genotype data for ss23145067.

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