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Submitted SNP(ss) Details: ss23145072           
Submitter
HandlePERLEGEN
Submitter SNP IDafd1130718
RefSNP(rs#)rs16858688
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 15
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145072|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 AAGCAATGAC CCAGCACCTC AGGAATTACC TTACTATCTG CCCCATTTCT CATATTATTT
 GTAAGTGCCA GCCAGCTAGA ACCCTATA
 CCCAGAAACA TA
 Y
 CCCAAAAGGA AG
 CCAGGAAGGT CTTTTTTTTT TTTTTTTTTT TTTTTTTTGA GACACAGTCT TGCTCTGTCA
 CCCAGGCTGG AGTGCAGTGG TGCGCTCT

  Submitted Frequency for ss23145072 back to top
There is no frequency submission for ss23145072.


  dbSNP summary of Genotypes for ss23145072 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848T=0.83333331
C=0.16666667T/T=0.66666669
C/T=0.33333334
Pr(chiSq=0.293,df=1)
=0.655
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.76086956
C=0.23913044T/T=0.60869563
C/T=0.30434781
C/C=0.08695652
Pr(chiSq=0.616,df=1)
=0.439
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848T=0.77083331
C=0.22916667T/T=0.66666669
C/T=0.20833333
C/C=0.12500000
Pr(chiSq=4.041,df=1)
=0.050
Genotype
Freq.
HapMap-CEU220220T=0.88181818
C=0.11818182T/T=0.77272725
C/T=0.21818182
C/C=0.00909091
Pr(chiSq=0.241,df=1)
=0.655
Genotype
Freq.
HapMap-HCB
EAST ASIA
8484T=0.77380955
C=0.22619048T/T=0.61904764
C/T=0.30952382
C/C=0.07142857
Pr(chiSq=0.563,df=1)
=0.479
Genotype
Freq.
HapMap-JPT172172T=0.66279072
C=0.33720931T/T=0.45348838
C/T=0.41860464
C/C=0.12790698
Pr(chiSq=0.347,df=1)
=0.584
Genotype
Freq.
HapMap-YRI224224T=0.82589287
C=0.17410715T/T=0.69642860
C/T=0.25892857
C/C=0.04464286
Pr(chiSq=1.112,df=1)
=0.294
Genotype
Freq.
HAPMAP-ASW9898T=0.74489796
C=0.25510204T/T=0.63265306
C/T=0.22448979
C/C=0.14285715
Pr(chiSq=8.209,df=1)
=0.005
Genotype
Freq.
HAPMAP-CHB8282T=0.84146339
C=0.15853658T/T=0.68292683
C/T=0.31707317
Pr(chiSq=0.425,df=1)
=0.527
Genotype
Freq.
HAPMAP-CHD170170T=0.77647060
C=0.22352941T/T=0.58823532
C/T=0.37647060
C/C=0.03529412
Pr(chiSq=0.607,df=1)
=0.439
Genotype
Freq.
HAPMAP-GIH176176T=0.93181819
C=0.06818182T/T=0.87500000
C/T=0.11363637
C/C=0.01136364
Pr(chiSq=0.983,df=1)
=0.343
Genotype
Freq.
HAPMAP-LWK178178T=0.75842696
C=0.24157304T/T=0.56179774
C/T=0.39325842
C/C=0.04494382
Pr(chiSq=0.477,df=1)
=0.527
Genotype
Freq.
HAPMAP-MEX100100T=0.82999998
C=0.17000000T/T=0.69999999
C/T=0.25999999
C/C=0.04000000
Pr(chiSq=0.309,df=1)
=0.584
Genotype
Freq.
HAPMAP-MKK286286T=0.79720283
C=0.20279720T/T=0.61538464
C/T=0.36363637
C/C=0.02097902
Pr(chiSq=2.221,df=1)
=0.150
Genotype
Freq.
HAPMAP-TSI176176T=0.83522725
C=0.16477273T/T=0.68181819
C/T=0.30681819
C/C=0.01136364
Pr(chiSq=1.158,df=1)
=0.294
Genotype
Freq.

  Submitted individual genotype for ss23145072 back to top
There is no individual genotype data for ss23145072.