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Submitted SNP(ss) Details: ss24235130           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0556067
RefSNP(rs#)rs12405566
Submitted Batch IDAFD_EUR_18-MAY-2004
Submitted DateAug 21, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_EUR_PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24235130|allelePos=101|len=201|taxid=9606|alleles='A/G'|mol=Genomic
 TGCTTTTCAG GTGGGGTTCA CATTTCTGCA AGTTATCAAC TCAGTTGTTT CTGAGGCTCT
 GTTAAGTTCT TGCTAAACCC AAATTCTC
 CCTACAGGAA AA
 R
 TCCTACAGAG GC
 TGGTAAATCT AATTATCATT TGGGCATTGA ATTTTAGCCA TCAAACCACT ACACCATTTC
 AGGGAAATCT ACAGCCATTT TTCTTCAC

  Submitted Frequency for ss24235130 back to top
There is no frequency submission for ss24235130.


  dbSNP summary of Genotypes for ss24235130 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848A=0.64583331
G=0.35416666A/A=0.50000000
A/G=0.29166666
G/G=0.20833333
Pr(chiSq=3.153,df=1)
=0.100
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646A=0.93478262
G=0.06521739A/A=0.86956519
A/G=0.13043478
Pr(chiSq=0.014,df=1)
=1.000
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848A=0.81250000
G=0.18750000A/A=0.66666669
A/G=0.29166666
G/G=0.04166667
Pr(chiSq=0.044,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss24235130 back to top
There is no individual genotype data for ss24235130.

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