Submitted SNP(ss) Details: ss24235132

Submitted SNP(ss) Details: ss24235132

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0556071
RefSNP(rs#)	rs387289
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTACCACATC CAAGGATATT CCCAGAATTT AGCAAAAAGA AGCAAATATA TATATATATA
 TATATTAAGA GAATGTTTTC AAGACTTC
 TTTCTAAAAT GA
 Y
 TGTGGCAATT AC
 AGGCACAATC TGGCAGGAGG TACCATGGAT CTTGCCACCC AGGCAAGACT CATCTCATTG
 GTCACCTCTT TGCTCCATCT CTAAAATT

Submitted Frequency for ss24235132

There is no frequency submission for ss24235132.

dbSNP summary of Genotypes for ss24235132

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	T=0.56250000	C=0.43750000	C/T=0.45833334 T/T=0.33333334 C/C=0.20833333	Pr(chiSq=0.114,df=1) =0.752	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	40	40	T=0.92500001	C=0.07500000	T/T=0.85000002 C/T=0.15000001	Pr(chiSq=0.019,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	T=0.75000000	C=0.25000000	T/T=0.54166669 C/T=0.41666666 C/C=0.04166667	Pr(chiSq=0.296,df=1) =0.655	Genotype Freq.

Submitted individual genotype for ss24235132

There is no individual genotype data for ss24235132.

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