Submitted SNP(ss) Details: ss24235134

Submitted SNP(ss) Details: ss24235134

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0556106
RefSNP(rs#)	rs10487982
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	T/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GTTACTGAAA CACTATTACC TGATATCTTC CATATTAAAA CTTTCTTGTC TGTAGTTTTG
 TATGATTTCT GATTACTCAC TTTTGTCG
 GTATGCATTG GT
 K
 CTCTTTTCTA TA
 ATTTTTCTTA TGTATCTTTG TATCATTTGG GGCCAGTACT GTTTGTTTTT TGTTAATTCT
 TATCAGAGGC TGATTTGAAC TTTCCTAG

Submitted Frequency for ss24235134

There is no frequency submission for ss24235134.

dbSNP summary of Genotypes for ss24235134

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	46	46	T=0.65217394	G=0.34782609	T/T=0.52173913 G/T=0.26086956 G/G=0.21739130	Pr(chiSq=4.154,df=1) =0.050	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	44	44	T=0.79545456	G=0.20454545	T/T=0.68181819 G/T=0.22727273 G/G=0.09090909	Pr(chiSq=2.001,df=1) =0.200	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	T=0.77083331	G=0.22916667	T/T=0.58333331 G/T=0.37500000 G/G=0.04166667	Pr(chiSq=0.091,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24235134

There is no individual genotype data for ss24235134.

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