Submitted SNP(ss) Details: ss24235138

Submitted SNP(ss) Details: ss24235138

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0556280
RefSNP(rs#)	rs879250304
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AAAGTTCTGG CATAGATAAA ACTAAATGTT TATATAAACA AGCATTTGAA CAGCTGAGGG
 AAAAGATTGA TCGTTGAGGG CTAAAGGT
 TTAAGAGCCT TA
 Y
 AGAAGATGTA AC
 AATTGATCTG AACCTTAGAA GATGGGTTAA AATCTAAACT AGGGAACCTA TACTATATAC
 TAATTATACA TTTAATAGGC TTGGGTTC

Submitted Frequency for ss24235138

There is no frequency submission for ss24235138.

dbSNP summary of Genotypes for ss24235138

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	44	44	T=0.70454544	C=0.29545453	C/T=0.59090906 T/T=0.40909091	Pr(chiSq=1.948,df=1) =0.200	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	44	44	T=0.97727275	C=0.02272727	T/T=0.95454544 C/T=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	46	46	T=0.73913044	C=0.26086956	C/T=0.52173913 T/T=0.47826087	Pr(chiSq=1.300,df=1) =0.273	Genotype Freq.

Submitted individual genotype for ss24235138

There is no individual genotype data for ss24235138.

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