Submitted SNP(ss) Details: ss28532904

Submitted SNP(ss) Details: ss28532904

Submitter
Handle	ABI
Submitter SNP ID	hCV1927108
RefSNP(rs#)	rs1802778
Submitted Batch ID	xplore_hum_chr1_1
Submitted Date	Jul 18, 2005
Publication Cited	N.D.
First entry to dbSNP	Nov 10 2004 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	XPLORE
Ascertainment Samplesize	10
Population	Celera_Donors

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 3
Genotype Summary	population count: 13
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTTTATGGGA AAATAATTGA AAACCAGCTA AAAGTTCTTG TTCTAAAAGG CTATATGACT
 TCTCTTCCTG GTAAGAAATT ATTGGAAGTC CAGATTCATA TATGGGATTG CCTCTACATT
 TATTATTTTG CACTTAAAAG CATCCTACAA ATACAATCAG TAATTAATCA GCCGACATAG
 TCCATTTGAG AAGGGAGAAG ATTGTTCTAA GAGAAGCTCA TTATGAAAAA CTAGGAAAAA
 TGAAGACTCT TTTCGAGCCC TCTGCCTCCT GCTTTACCAA ACACAGGTTC TAGATTGCCA
 R
 TTCCACACTC GGATGGTCTG ATCATCGGAG GCACTCAGAA TCCAGGGATA TTCCTGAAAG
 ATATTCCAGA CAAAGGCTTT AAACATTAAA CAAATCTGTT CTATCAGGTT CTTGTAATCA
 TTTTTCTCTA AAGAACTGCA TTGCTTAACG GCTCAGCTAC ATTAGCAAAG GGGCTGCTGC
 TTTTGCTATC AGGTTAGCTG TCTCCTTTTC TCTACCACTC TAACAGCTTT TCTCAACTTC
 GGCACTTTCA CCTATAAGAC TTAAGAATGG AAGCCAGTTA GAGGCACAAT ACATTCTCAG

Submitted Frequency for ss28532904

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	Submission Batch	Submitter
AoD_Caucasian - NORTH AMERICA	92	A=0.57999998	G=0.41999999		xplore_hum_chr1_1	ABI
AoD_African_American - NORTH AMERICA	90	A=0.83999997	G=0.16000000		xplore_hum_chr1_1	ABI
Shanghai Chinese - EAST ASIA	160			A/G=0.56250000 A/A=0.27500001 G/G=0.15000001 N/N=0.01250000	2002IND_A	SH_DIABETES_INS

dbSNP summary of Genotypes for ss28532904

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HAPMAP-CHB	82	82	G=0.54878050	A=0.45121950	A/G=0.46341464 G/G=0.31707317 A/A=0.21951219	Pr(chiSq=0.169,df=1) =0.752	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	G=0.54651165	A=0.45348838	A/G=0.53488374 G/G=0.27906978 A/A=0.18604651	Pr(chiSq=0.269,df=1) =0.655	Genotype Freq.
HAPMAP-ASW	98	98	A=0.78571427	G=0.21428572	A/A=0.61224490 A/G=0.34693879 G/G=0.04081633	Pr(chiSq=0.045,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	100	100	A=0.51999998	G=0.47999999	A/G=0.40000001 A/A=0.31999999 G/G=0.28000000	Pr(chiSq=1.974,df=1) =0.200	Genotype Freq.
Shanghai Chinese - EAST ASIA	158	158	A=0.56329113	G=0.43670887	A/G=0.56962025 A/A=0.27848101 G/G=0.15189873	Pr(chiSq=1.967,df=1) =0.200	Genotype Freq.
HAPMAP-CHD	168	168	G=0.55357140	A=0.44642857	A/G=0.44047618 G/G=0.33333334 A/A=0.22619048	Pr(chiSq=0.995,df=1) =0.343	Genotype Freq.
HapMap-JPT	172	172	G=0.52906978	A=0.47093022	A/G=0.52325583 G/G=0.26744187 A/A=0.20930232	Pr(chiSq=0.216,df=1) =0.655	Genotype Freq.
HAPMAP-GIH	176	176	A=0.74431819	G=0.25568181	A/A=0.53409094 A/G=0.42045453 G/G=0.04545455	Pr(chiSq=0.964,df=1) =0.343	Genotype Freq.
HAPMAP-TSI	176	176	A=0.59659094	G=0.40340909	A/G=0.44318181 A/A=0.37500000 G/G=0.18181819	Pr(chiSq=0.553,df=1) =0.479	Genotype Freq.
HAPMAP-LWK	180	180	A=0.96666664	G=0.03333334	A/A=0.93333334 A/G=0.06666667	Pr(chiSq=0.007,df=1) =1.000	Genotype Freq.
HapMap-CEU	226	226	A=0.57522124	G=0.42477876	A/G=0.51327431 A/A=0.31858408 G/G=0.16814159	Pr(chiSq=0.286,df=1) =0.655	Genotype Freq.
HapMap-YRI	226	226	A=0.90707964	G=0.09292036	A/A=0.82300884 A/G=0.16814159 G/G=0.00884956	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	A=0.94405591	G=0.05594406	A/A=0.88811189 A/G=0.11188811	Pr(chiSq=0.055,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss28532904

There is no individual genotype data for ss28532904.

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