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Submitted SNP(ss) Details: ss314179           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000621-71
RefSNP(rs#)rs244424
Submitted Batch IDOVLP-000621-1
Submitted DateJun 30, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPJun 30 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:CITB-H1_2020C3 SequenceAccession1:AC020918 SequenceContigName1:Contig39 SequenceContigPosition1:4399 SequenceLocalName2:CIT-HSPC_534K6 SequenceAccession2:AC018756 SequenceContigName2:Contig46 SequenceContigPosition2:5032 PolyBayesConfidence:99

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss314179|allelePos=1001|len=2001|taxid=9606|alleles='C/T'|mol=Genomic
 TTTTAAAatt atatttaaag ttctgagata catgtgcaga acacgcaggt ttgttacaca
 ggcatacaca tgccatggtg gtttgctgca cccattaacc catcatttac attaggtatt
 tctcctaatg ctatccccta gccccacacc ctgcgacagg gcccagtttt tgatgttccc
 ctccccgtgt ctacgtgttc tcattgttca actcctactt atgagtgaga acatgagatg
 ttcagttttc tgttcctgtg ttagtttgct gagaatgatg gtttccagct tcatccatgt
 ccctgcaaag cacatgaact cattcttttt catggctgca tagtattcca tggtgtatat
 gtgccacatt ttctttatac agtctatcat tgatgggcat ttgggttggt tccaactctt
 tgctattgtg aatagtgctg caataaacat acctgtgcat gtgtttatag tagaatgatt
 cataatcctt tgggtatata cccagtaatg caattattgg gtcaaatggt atttctggtt
 ctagatcctt gaggaattgc cacactgttt tccacaatgg ttgaactaat ttacactccc
 accaacagtg taaaaacttt cgtatttctc cacatcctct ccagcatctg ttgtttcctg
 actttttaat gatcaccatt ctaactggca agagatggta tctcactgtg gttttgattt
 gcatttctct aatgaccagt gatgatgagc tttttttttt ttgagatgga gtctcactct
 gtcgcccagg ctggagtgca gtggcatgat cttggctcac tgcaagctcc gcctcccaag
 ttcacaccat tttcctgcct cagcctcccc agcagctggg actacaggcg cacgctgcca
 cacctggcta atttttgtat tttttagtag agatggggtt tcactgtgtt agccaggatg
 gtctcaatct cctgaccttg tgatccgccc acctcggcct
 Y
 ccaaagtgct ggggttacag gcgtgagcca ccacgcccag tgatgagctt tttttcatac
 gtttgttggc cacatacatt tcttcttttg agaactgtct gtttatatcc tttgccactc
 tttgatggtt ttttttcttg taaatttgct taagttcctt gtagattctg gatattagcc
 ctttgtcaga tgggtagatt gcaaaaattt tattccattc tgtaggttgc ctgttcactc
 tgatgatagt ttcttttgct gtgcagaagc tctttagttt aattcgatct catttgtcaa
 ttttggcttt tgttactatt gcttttggta ttttagtcac gaagtctttg cccatgccta
 cgtcctgaac ggtattgcct agattttctt ctggggattt tatagtttta cactttccat
 ttaagtcttt aatctatctt gagttaattt ttgtatgagg tgtaaggaag ggttccagtt
 tcagttttct gcatatggct agccagtttt cccaacacca tttattaaat aggaaatctt
 ttccctattg cttctttttg ttaagtttgt caaagatcag atggttgtag atgtgtggca
 ttatttctga ggactctgtt ttgttccatt ggtctacata tctgttttgg taccagtacc
 atgctgtttt gattactgta ggcttgtagt atagtttgaa gtcaggtagc gtgatgcatc
 caactttgtt ctttttgctt agaattatct tggctatatg ggctcttttt tggttccata
 tgaaatttaa agtagctttt tctaattctg tgacgaaagt caatggtagc ttgatggata
 gcattgaatc tataaatcac tttgggaagt atggccattt tcacaatatt gattcttcct
 atctgtgagt atggaacgtt aatccagcag cacatcaaaa agcttatcca acatgatcaa
 gtcagctcca tccctgggat gtaaggctgg ttcaacatac

  Submitted Frequency for ss314179 back to top
There is no frequency submission for ss314179.


  dbSNP summary of Genotypes for ss314179 back to top
No sufficient data to compute Hardy-weinberg probability for ss314179.


  Submitted individual genotype for ss314179 back to top
There is no individual genotype data for ss314179.

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