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Submitted SNP(ss) Details: ss341923277           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-69476
RefSNP(rs#)rs148502021
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize3378
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923277|allelePos=251|len=501|taxid=9606|alleles='T/C'|mol=Genomic
 TCCCACCTTC ACTCTCCCAT GTACTTCCTG CTAGCCAACC TCTCACTCAT TGATCTGTCT
 CTGTCTTCAG TCACAGCCCC CAAGATGATT ACTGACTTTT TCAGCCAGCG CAAAGTCATC
 TCTTTCAAGG GCTGCCTTGT TCAGATATTT CTCCTTCACT TCTTTGGTGG GAGTGAGATG
 GTGATCCTCA TAGCCATGGG CTTTGACAGA TATATAGCAA TATGCAAGCC CCTACACTAC
 ACTACAATTA
 Y
 GTGTGGCAAC GCATGTGTCG GCATTATGGC TGTCACATGG GGAATTGGCT TTCTCCATTC
 GGTGAGCCAG TTGGCGTTTG CCGTGCACTT ACTCTTCTGT GGTCCCAATG AGGTCGATAG
 TTTTTATTGT GACCTTCCTA GGGTAATCAA ACTTGCCTGT ACAGATACCT ACAGGCTAGA
 TATTATGGTC ATTGCTAACA GTGGTGTGCT CACTGTGTGT TCTTTTGTTC TTCTAATCAT
 CTCATACACT

  Submitted Frequency for ss341923277 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
10930T/T=0.99981701
C/C=0.00018300
C/T=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923277 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
33783378T=0.99940795
C=0.00059207T/T=0.99940795
C/C=0.00059207
C/T=0.00000000
Pr(chiSq=1689.000,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss341923277 back to top
There is no individual genotype data for ss341923277.

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