NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss341923291           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-865611
RefSNP(rs#)rs137994032
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize3382
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923291|allelePos=251|len=501|taxid=9606|alleles='G/C'|mol=Genomic
 GAGGGAGGAT GGCTGCTCTG AGGGCACCTC TGCCGTGCTT GGGGCTCGGC CTGGGGTGCG
 AGACCAGGGC AGACCCCCGG GAGATGGAAC GGCCCGGTCC AGCCCCACCT TCCTCTCCTC
 CTGCCCCACC TTCCTCTCCT CCTGCCCCAC CTTCCTCTCC TCCTGCCCCA CCAGAACCGG
 GGGCGGCTGG CAGACAAGAG GACAGTCGCC CTGCCTGCCG CCCGGAACCT GAAGAAGGAG
 CGAACTCCCA
 S
 CTTCTCTGCC AGCGATGGTG ACAGCGACGG GAGTGGCCCC ACCTGTGGGC GGCGGCCAGG
 CTTGAAGCAG GAGGATGGTC CGCACATCCG TATCATGAAG AGAAGGTACT TGGACCAGGG
 CCGGACAGGA AGGCGCAAGG CTCAGATGGG GCTGGAGCTT CAGGCCTTCA GCTGCTCAGA
 TGAGAGTGTC CACACCGGCC TCCCACACCT TCCCTCAGAT GCTGGTCTTT TTGGGGTCCT
 GTGTGGGTCG

  Submitted Frequency for ss341923291 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		12984G/G=0.99984598
C/G=0.00015400
C/C=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923291 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		33823382G=0.99970430
C=0.00029568G/G=0.99940866
C/G=0.00059137
C/C=0.00000000
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss341923291 back to top
There is no individual genotype data for ss341923291.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement