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Submitted SNP(ss) Details: ss341923293           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-865625
RefSNP(rs#)rs146327803
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize3840
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923293|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 GCTCTGAGGG CACCTCTGCC GTGCTTGGGG CTCGGCCTGG GGTGCGAGAC CAGGGCAGAC
 CCCCGGGAGA TGGAACGGCC CGGTCCAGCC CCACCTTCCT CTCCTCCTGC CCCACCTTCC
 TCTCCTCCTG CCCCACCTTC CTCTCCTCCT GCCCCACCAG AACCGGGGGC GGCTGGCAGA
 CAAGAGGACA GTCGCCCTGC CTGCCGCCCG GAACCTGAAG AAGGAGCGAA CTCCCAGCTT
 CTCTGCCAGC
 R
 ATGGTGACAG CGACGGGAGT GGCCCCACCT GTGGGCGGCG GCCAGGCTTG AAGCAGGAGG
 ATGGTCCGCA CATCCGTATC ATGAAGAGAA GGTACTTGGA CCAGGGCCGG ACAGGAAGGC
 GCAAGGCTCA GATGGGGCTG GAGCTTCAGG CCTTCAGCTG CTCAGATGAG AGTGTCCACA
 CCGGCCTCCC ACACCTTCCC TCAGATGCTG GTCTTTTTGG GGTCCTGTGT GGGTCGCAGG
 CAGGAGCTGT

  Submitted Frequency for ss341923293 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		12986G/G=0.99861401
A/G=0.00138600
A/A=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923293 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		38403840G=0.99843752
A=0.00156250G/G=0.99687499
A/G=0.00312500
A/A=0.00000000
Pr(chiSq=0.005,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss341923293 back to top
There is no individual genotype data for ss341923293.

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