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Submitted SNP(ss) Details: ss341923303           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-865662
RefSNP(rs#)rs140751899
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4044
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923303|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 TGGGGTGCGA GACCAGGGCA GACCCCCGGG AGATGGAACG GCCCGGTCCA GCCCCACCTT
 CCTCTCCTCC TGCCCCACCT TCCTCTCCTC CTGCCCCACC TTCCTCTCCT CCTGCCCCAC
 CAGAACCGGG GGCGGCTGGC AGACAAGAGG ACAGTCGCCC TGCCTGCCGC CCGGAACCTG
 AAGAAGGAGC GAACTCCCAG CTTCTCTGCC AGCGATGGTG ACAGCGACGG GAGTGGCCCC
 ACCTGTGGGC
 R
 GCGGCCAGGC TTGAAGCAGG AGGATGGTCC GCACATCCGT ATCATGAAGA GAAGGTACTT
 GGACCAGGGC CGGACAGGAA GGCGCAAGGC TCAGATGGGG CTGGAGCTTC AGGCCTTCAG
 CTGCTCAGAT GAGAGTGTCC ACACCGGCCT CCCACACCTT CCCTCAGATG CTGGTCTTTT
 TGGGGTCCTG TGTGGGTCGC AGGCAGGAGC TGTTTCCTCA TCTGCCCCCT GTCTGGCGTC
 CCCTCCCACC

  Submitted Frequency for ss341923303 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
12984G/G=0.99707299
A/G=0.00292700
A/A=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923303 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
40444044G=0.99826902
A=0.00173096G/G=0.99653810
A/G=0.00346192
A/A=0.00000000
Pr(chiSq=0.006,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss341923303 back to top
There is no individual genotype data for ss341923303.

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