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Submitted SNP(ss) Details: ss341923309           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-865694
RefSNP(rs#)rs9988179
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4136
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923309|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 ATGGAACGGC CCGGTCCAGC CCCACCTTCC TCTCCTCCTG CCCCACCTTC CTCTCCTCCT
 GCCCCACCTT CCTCTCCTCC TGCCCCACCA GAACCGGGGG CGGCTGGCAG ACAAGAGGAC
 AGTCGCCCTG CCTGCCGCCC GGAACCTGAA GAAGGAGCGA ACTCCCAGCT TCTCTGCCAG
 CGATGGTGAC AGCGACGGGA GTGGCCCCAC CTGTGGGCGG CGGCCAGGCT TGAAGCAGGA
 GGATGGTCCG
 Y
 ACATCCGTAT CATGAAGAGA AGGTACTTGG ACCAGGGCCG GACAGGAAGG CGCAAGGCTC
 AGATGGGGCT GGAGCTTCAG GCCTTCAGCT GCTCAGATGA GAGTGTCCAC ACCGGCCTCC
 CACACCTTCC CTCAGATGCT GGTCTTTTTG GGGTCCTGTG TGGGTCGCAG GCAGGAGCTG
 TTTCCTCATC TGCCCCCTGT CTGGCGTCCC CTCCCACCTC TGCTCTGCGG CGCTCACTGG
 CAGAGGCAGG

  Submitted Frequency for ss341923309 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
12982C/C=0.98567200
C/T=0.01401900
T/T=0.00030800
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923309 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
41364136C=0.99057060
T=0.00942940C/C=0.98210829
C/T=0.01692457
T/T=0.00096712
Pr(chiSq=18.281,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss341923309 back to top
There is no individual genotype data for ss341923309.

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