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Submitted SNP(ss) Details: ss341923316           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-866422
RefSNP(rs#)rs139210662
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923316|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 TTCTTCCTGA TGCGTGTCTG CTGAGGCCAG GAGCTGGCTT TGGCCCATGG GCCTGTCCTA
 GTGGGAGGCC CCAGCATGTT GAGCCAGTAG CAGGTGGTGC TGGGCATGGC AGCCGCCCTC
 GTTCACTGCC CAGGGCTGTG GCCCAGCGGG GCACTGACCC GAGACAGGTC TGCGCACGCC
 CTGCTATCCT GAGGCTGGGG TCAGGGGCCT CCAGAGCAAC ATGGACCTTC TGCTTCCCTT
 CCTGCAGAGT
 Y
 CACACCCACT GGGACGTGAA CATCTCTTTC CGAGAGGCGT CCTGCAGGTA GGAGCCGTGC
 TGTGCGTGCA TAAGAGGGGG CCGTGACTCC CCTCCCTCCC TCCCACCCCT GACCGTGCCC
 TGCTGTCTGC TGTCCGCTGT CTCAGCGTGA GCTGATGCTG TGATGCTGGC TGAGTGTCTG
 CCAGGTTTGA CATGTGCTGC AAGGTTGTCC CCCATCCCGG GAGGCAGACA GTGTTGCACC
 CAGTTGGGAC

  Submitted Frequency for ss341923316 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006C/C=0.98969698
C/T=0.01030300
T/T=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923316 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45504550C=0.99252748
T=0.00747253C/C=0.98505497
C/T=0.01494506
T/T=0.00000000
Pr(chiSq=0.129,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss341923316 back to top
There is no individual genotype data for ss341923316.

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