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Submitted SNP(ss) Details: ss341923339           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-871213
RefSNP(rs#)rs144490434
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4548
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923339|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 TGACTCGGGT GCTGCGTGGG TGTGCACACA GTGGCGTCAC GGGCCACATG CCGAGGCGTG
 GGCACAGCAA CGTGGCACTC AGAGGTCATC CCCACGCTCA CACACAGAGC TAGGCACTCC
 CTGTGCCCAG GCTGGGCTCC AGCCTCGCAG CTGCCCACGG GGTCAGCTTT TCCCGGTCTC
 GTTCTGCAGC CAGGACGGCA ACCTTCCCAC CCTCATATCC AGCGTCCACC GCAGCCGCCA
 CCTCGTTATG
 S
 CCGAGCATCA GAGCCGCTGT GAATTCCAGA GAGGCAGCCT GGAGATTGGC CTGCGACCCG
 CCGGTGAGGA GCACAGGGGG CCTGAGGGCG GGGTCGGGGC TGTGGGGCCA GAGGACGGTG
 GCGTCTCCAC TCAGCACCAG CAGCCTTGGC AGGCAGCCAG AGAGGCAGGA GGAGCGGCCT
 GTCCCCCAGG GGCTGCATGG GATGGTAATT GTGTTAATCC CAGCCAGCGG GGCAGACAGG
 AGGCAGAGGC

  Submitted Frequency for ss341923339 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006C/C=0.99969202
C/G=0.00030800
G/G=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923339 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45484548C=0.99978012
G=0.00021988C/C=0.99956024
C/G=0.00043975
G/G=0.00000000
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss341923339 back to top
There is no individual genotype data for ss341923339.

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