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Submitted SNP(ss) Details: ss341932196           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-11008844
RefSNP(rs#)rs117528334
Submitted Batch IDESP6500SI
Submitted DateFeb 20, 2013
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize13006
PopulationESP_Cohort_Populations
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341932196|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 GGGAGCGTGG CTGGAGGTGT GGGGTGTCCA GGGATCCCTG CTTCCCCTGG GGGAGGCTGG
 GGACCTCGCT GAGCTTGCAC CACTCTGGGG AGAATGGAGG
 Y
 AGATGTCTGG CCTCTTCTCG CCGGTTTGGC TGTTTGCAGG AATGGTCCAA GCCCCTTCTT
 CACCAAGAGA GAAGTGGAGA GAGAAAAAGC ATTAGAAACA

  Submitted Frequency for ss341932196 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006C/C=0.99984598
C/T=0.00015400
T/T=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341932196 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
41044104C=0.99975634
G=0.00024366C/C=0.99951267
C/G=0.00048733
G/G=0.00000000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss341932196 back to top
There is no individual genotype data for ss341932196.

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