NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss38349666           
Submitter
HandleEGP_SNPS
Submitter SNP IDPTEN-001933
RefSNP(rs#)rs34149102
Submitted Batch IDPTEN-EGP_YORUB-060105
Submitted DateJul 07, 2005
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize6
PopulationEGP_YORUB-PANEL
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38349666|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 CCCCACAACA GCCTACCCTG CCTCCGGCTG GGTTTCTGGG CAGAGGCCGA GGCTTAGCTC
 GTTATCCTCG CCTCGCGTTG CTGCAAAAGC CGCAGCAAGT GCAGCTGCAG GCTGGCGGCT
 GGGAACCGGC CCGAGCAAGC CCCAGGCAGC TACACTGGGC ATGCTCAGTA GAGCCTGCGG
 CTTGGGGACT CTGCGCTCGC ACCCAGAGCT ACCGCTCTGC CCCCTCCTAC CGCCCCCTGC
 CCTGCCCTGC CCTCC
 M
 CTCGCCCGGC GCGGTCCCGT CCGCCTCTCG CTCGCCTCCC GCCTCCCCTC GGTCTTCCGA
 GGCGCCCGGG CTCCCGGCGC GGCGGCGGAG GGGGCGGGCA GGCCGGCGGG CGGTGATGTG
 GCGGGACTCT TTATGCGCTG CGGCAGGATA CGCGCTCGGC GCTGGGACGC GACTGCGCTC
 AGTTCTCTCC TCTCGGAAGC TGCAGCCATG ATGGAAGTTT GAGAGTTGAG CCGCTGTGAG
 GCGAGGCCGG GCTCA

  Submitted Frequency for ss38349666 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
EGP_CEPH-PANEL28C=0.96428603
A=0.03571400
PTEN-EGP_CEPH-060105EGP_SNPS
EGP_HISP-PANEL42C=1.00000000
A=0.00000000
PTEN-EGP_HISP-060105EGP_SNPS
EGP_YORUB-PANEL6C=1.00000000
A=0.00000000
PTEN-EGP_YORUB-060105EGP_SNPS
EGP_AD-PANEL22C=1.00000000
A=0.00000000
PTEN-EGP_AD-060105EGP_SNPS
EGP_ASIAN-PANEL34C=1.00000000
A=0.00000000
PTEN-EGP_ASIAN-060105EGP_SNPS


  dbSNP summary of Genotypes for ss38349666 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
EGP_CEPH-PANEL2828C=0.96428573
A=0.03571429C/C=0.92857140
A/C=0.07142857
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss38349666 back to top
There is no individual genotype data for ss38349666.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement