Submitted SNP(ss) Details: ss38349668

Submitted SNP(ss) Details: ss38349668

Submitter
Handle	EGP_SNPS
Submitter SNP ID	PTEN-002369
RefSNP(rs#)	rs35736544
Submitted Batch ID	PTEN-EGP_YORUB-060105
Submitted Date	Jul 07, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Jul 7 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ073384
Submitted Gene Name	PTEN
Submitted Gene ID	5728
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	16
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGTTCTCTCC TCTCGGAAGC TGCAGCCATG ATGGAAGTTT GAGAGTTGAG CCGCTGTGAG
 GCGAGGCCGG GCTCAGGCGA GGGAGATGAG AGACGGCGGC GGCCGCGGCC CGGAGCCCCT
 CTCAGCGCCT GTGAGCAGCC GCGGGGGCAG CGCCCTCGGG GAGCCGGCCG GCCTGCGGCG
 GCGGCAGCGG CGGCGTTTCT CGCCTCCTCT TCGTCTTTTC TAACCGTGCA GCCTCTTCCT
 CGGCTTCTCC TGAAA
 R
 GGAAGGTGGA AGCCGTGGGC TCGGGCGGGA GCCGGCTGAG GCGCGGCGGC GGCGGCGGCG
 GCACCTCCCG CTCCTGGAGC GGGGGGGAGA AGCGGCGGCG GCGGCGGCCG CGGCGGCTGC
 AGCTCCAGGG AGGGGGTCTG AGTCGCCTGT CACCATTTCC AGGGCTGGGA ACGCCGGAGA
 GTTGGTCTCT CCCCTTCTAC TGCCTCCAAC ACGGCGGCGG CGGCGGCGGC ACATCCAGGG
 ACCCGGGCCG GTTTT

Submitted Frequency for ss38349668

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	32	G=1.00000000	A=0.00000000	PTEN-EGP_HISP-060105	EGP_SNPS
EGP_YORUB-PANEL	16	G=1.00000000	A=0.00000000	PTEN-EGP_YORUB-060105	EGP_SNPS
EGP_AD-PANEL	24	G=0.95833302	A=0.04166700	PTEN-EGP_AD-060105	EGP_SNPS
EGP_ASIAN-PANEL	46	G=1.00000000	A=0.00000000	PTEN-EGP_ASIAN-060105	EGP_SNPS
EGP_CEPH-PANEL	34	G=1.00000000	A=0.00000000	PTEN-EGP_CEPH-060105	EGP_SNPS

dbSNP summary of Genotypes for ss38349668

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_AD-PANEL	24	24	G=0.95833331	A=0.04166667	G/G=0.91666669 A/G=0.08333334	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss38349668

There is no individual genotype data for ss38349668.

Disclaimer Privacy statement