Submitted SNP(ss) Details: ss38349672

Submitted SNP(ss) Details: ss38349672

Submitter
Handle	EGP_SNPS
Submitter SNP ID	PTEN-003476
RefSNP(rs#)	rs34370865
Submitted Batch ID	PTEN-EGP_YORUB-060105
Submitted Date	Jul 07, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Jul 7 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ073384
Submitted Gene Name	PTEN
Submitted Gene ID	5728
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CGGAACTCTT GCCTGGTTGC AAGTGTCAAG CCACCGATTG CTTTCTTAGG CTATCTATAT
 GGTCTCTTCC TGAGGGCTAT TGTCCGTTAA TACAGAATAC AGTACACTGT TAGTGGATTA
 GCGAGCTCGG TAATCCGGTC TCCTAAATGA ACAAAAAAGT AGACGCTTTT TGAGGTTGAG
 CATATTTCGA TTAAATCTTG GCTTAGGCCC TAGATCAAGG GTTTAGATCA GAATAAAATG
 AAAATTAGTG TTGCA
 Y
 GTACGCATAT TGCATCAGAA TCTTGCAGTG ATTGTTTTAG TTTCCTGAGT TGCATTGATA
 GATTCTTTTA AAATATGACT GATTTGCATA ACTTTAGAAG CAGAATCATT TTCAGTATAT
 ATGGTGCACA TTGAGGGCAA AAAGTAGTTT TGTTAATGTT TAAACTTAAG TTACCTACAA
 CTTTGAACTG TATGTAGAAG TTTTGTAGTT TGAAGTCAAT AGTGCCATAA TATACCTTAT
 AAGGCGTTCT TACTA

Submitted Frequency for ss38349672

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	44	C=1.00000000	T=0.00000000	PTEN-EGP_CEPH-060105	EGP_SNPS
EGP_HISP-PANEL	44	C=0.97727299	T=0.02272700	PTEN-EGP_HISP-060105	EGP_SNPS
EGP_ASIAN-PANEL	46	C=1.00000000	T=0.00000000	PTEN-EGP_ASIAN-060105	EGP_SNPS
EGP_AD-PANEL	30	C=0.86666697	T=0.13333300	PTEN-EGP_AD-060105	EGP_SNPS
EGP_YORUB-PANEL	24	C=0.95833302	T=0.04166700	PTEN-EGP_YORUB-060105	EGP_SNPS

dbSNP summary of Genotypes for ss38349672

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	C=0.95833331	T=0.04166667	C/C=0.91666669 C/T=0.08333334	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
EGP_HISP-PANEL	44	44	C=0.97727275	T=0.02272727	C/C=0.95454544 C/T=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	30	30	C=0.86666667	T=0.13333334	C/C=0.73333335 C/T=0.26666668	Pr(chiSq=0.088,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss38349672

There is no individual genotype data for ss38349672.

Disclaimer Privacy statement