Submitted SNP(ss) Details: ss38349673

Submitted SNP(ss) Details: ss38349673

Submitter
Handle	EGP_SNPS
Submitter SNP ID	PTEN-003498
RefSNP(rs#)	rs34308750
Submitted Batch ID	PTEN-EGP_YORUB-060105
Submitted Date	Jul 07, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Jul 7 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ073384
Submitted Gene Name	PTEN
Submitted Gene ID	5728
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GTGTCAAGCC ACCGATTGCT TTCTTAGGCT ATCTATATGG TCTCTTCCTG AGGGCTATTG
 TCCGTTAATA CAGAATACAG TACACTGTTA GTGGATTAGC GAGCTCGGTA ATCCGGTCTC
 CTAAATGAAC AAAAAAGTAG ACGCTTTTTG AGGTTGAGCA TATTTCGATT AAATCTTGGC
 TTAGGCCCTA GATCAAGGGT TTAGATCAGA ATAAAATGAA AATTAGTGTT GCACGTACGC
 ATATTGCATC AGAAT
 Y
 TTGCAGTGAT TGTTTTAGTT TCCTGAGTTG CATTGATAGA TTCTTTTAAA ATATGACTGA
 TTTGCATAAC TTTAGAAGCA GAATCATTTT CAGTATATAT GGTGCACATT GAGGGCAAAA
 AGTAGTTTTG TTAATGTTTA AACTTAAGTT ACCTACAACT TTGAACTGTA TGTAGAAGTT
 TTGTAGTTTG AAGTCAATAG TGCCATAATA TACCTTATAA GGCGTTCTTA CTAGATCTTT
 GTTATATTTA CCTTT

Submitted Frequency for ss38349673

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_YORUB-PANEL	24	C=0.95833302	T=0.04166700	PTEN-EGP_YORUB-060105	EGP_SNPS
EGP_HISP-PANEL	44	C=1.00000000	T=0.00000000	PTEN-EGP_HISP-060105	EGP_SNPS
EGP_CEPH-PANEL	44	C=1.00000000	T=0.00000000	PTEN-EGP_CEPH-060105	EGP_SNPS
EGP_AD-PANEL	30	C=1.00000000	T=0.00000000	PTEN-EGP_AD-060105	EGP_SNPS
EGP_ASIAN-PANEL	48	C=1.00000000	T=0.00000000	PTEN-EGP_ASIAN-060105	EGP_SNPS

dbSNP summary of Genotypes for ss38349673

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	C=0.95833331	T=0.04166667	C/C=0.91666669 C/T=0.08333334	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss38349673

There is no individual genotype data for ss38349673.

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