Submitted SNP(ss) Details: ss38349684

Submitted SNP(ss) Details: ss38349684

Submitter
Handle	EGP_SNPS
Submitter SNP ID	PTEN-012045
RefSNP(rs#)	rs34453563
Submitted Batch ID	PTEN-EGP_YORUB-060105
Submitted Date	Jul 07, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Jul 7 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ073384
Submitted Gene Name	PTEN
Submitted Gene ID	5728
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	22
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACATCCCCGC TCAGCCACTT ATCAGTTACG TAGATACACT GCCTAACCTT AGTGAACCCT
 GTTTCGACAA CTCCAAAATG GGAGTAAAAA TCCTAAACTT GTACAGTGGT TTTTTAGTTT
 TGTTAAAAGT ACAGGTGAGG TTTTTTTCAG AGTATTGGTT GCCATCTGAG AGTGATCCCC
 TTTCACCTCC TCTAGGACTT TTAGCATTTT CTGGAGACAT TTTGGTGGTC ACAGCTGGGG
 TGGTAGAGTG TGCTA
 Y
 TGGCTAGGGG CTTGAAGCCA GTGATGCTGC TTAACATCCT ATATGGCACA AGACCCCTCC
 CCATCAACAA AGAATTATCT AGCCCAAAAT GCTGTGTAAA ATGTCTGGTA TATAATAAGT
 ATAATATTTG ATGAAAATCA GTACCTTTGC CCCCAGGTGT GATATTTAAG AAGGTCAACT
 TACTAAATCA GTGATGGAGT TAGTCCTAAC ATCTGGGTGT TCTGACTGCT GCTAGGCCAG
 TATTCTTTAT ATGAT

Submitted Frequency for ss38349684

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	40	T=1.00000000	C=0.00000000	PTEN-EGP_CEPH-060105	EGP_SNPS
EGP_ASIAN-PANEL	44	T=1.00000000	C=0.00000000	PTEN-EGP_ASIAN-060105	EGP_SNPS
EGP_AD-PANEL	30	T=1.00000000	C=0.00000000	PTEN-EGP_AD-060105	EGP_SNPS
EGP_HISP-PANEL	42	T=0.97618997	C=0.02381000	PTEN-EGP_HISP-060105	EGP_SNPS
EGP_YORUB-PANEL	22	T=1.00000000	C=0.00000000	PTEN-EGP_YORUB-060105	EGP_SNPS

dbSNP summary of Genotypes for ss38349684

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_HISP-PANEL	42	42	T=0.97619045	C=0.02380952	T/T=0.95238096 C/T=0.04761905	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss38349684

There is no individual genotype data for ss38349684.

Disclaimer Privacy statement