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Submitted SNP(ss) Details: ss43812518           
Submitter
HandleABI
Submitter SNP IDhCV26886183
RefSNP(rs#)rs10910479
Submitted Batch IDxplore_hum_chr1_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43812518|allelePos=301|len=601|taxid=9606|alleles='A/C'|mol=Genomic
 AAGATTCTAT TGGTCAAAAC TGCTATCTAG GCAGTTGCCA GTCCTTCAGG ATTTCCAAGC
 AGAAACCATA ATGAGTATTA AAAATCAGTG GGCTGGGAGC TCTAAGTCCC CAAACACATT
 CACAGTCAAC CATGTGATGT TCCCCATTGA CAACCCACAA GCAGAGGCAA GCTGCGGGGT
 GCCGCCCGAC CAGAGCAGAT TGCAGCCAGG CTGGCCTTCC TGAAAGACAC ACACACTGGT
 CCCTGGACCC TGGGACGCCC CCGCTCCCCC GACTGTTTAT GTTTGCTGTC ACACACTGAA
 M
 AATCACGCGG TACACTTCAC AGTCAGCAAG TTTATCTTGA GTTAAAGTTT GACCAGTAGA
 AACCAAGTTG TGTTTACCCC CGTCCTACAG CAAGTCATGT GCAAATAGCA CCTGTGAACA
 TTTTTCAGCA CACATTCTGT ACCCTCTCCA TGGTTCTCAT GGCAATGAAT GTTGCGGGGA
 AAGCCAGTAA GCGTGAAAGC TTTGGCAAAT GTTAAAATCC TCTCCGGAAA TGGTTCACAA
 TCACTGACAT CAGGGTGCAT GGGTCATGAC CATCTTCGTC GTTAGAGCAC ATTCCCTCTT

  Submitted Frequency for ss43812518 back to top
There is no frequency submission for ss43812518.


  dbSNP summary of Genotypes for ss43812518 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU218218C=0.77064222
A=0.22935779C/C=0.59633029
A/C=0.34862384
A/A=0.05504587
Pr(chiSq=0.021,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.98837209
A=0.01162791C/C=0.97674417
A/C=0.02325581
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172C=0.96511626
A=0.03488372C/C=0.93023258
A/C=0.06976745
Pr(chiSq=0.008,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226C=0.65044248
A=0.34955752A/C=0.45132744
C/C=0.42477876
A/A=0.12389380
Pr(chiSq=0.006,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9696C=0.63541669
A=0.36458334A/C=0.43750000
C/C=0.41666666
A/A=0.14583333
Pr(chiSq=0.149,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHB8282C=0.90243900
A=0.09756097C/C=0.80487806
A/C=0.19512194
Pr(chiSq=0.089,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD170170C=0.91764706
A=0.08235294C/C=0.83529413
A/C=0.16470589
Pr(chiSq=0.108,df=1)
=0.752
Genotype
Freq.
HAPMAP-GIH176176C=0.84659094
A=0.15340909C/C=0.70454544
A/C=0.28409091
A/A=0.01136364
Pr(chiSq=0.773,df=1)
=0.403
Genotype
Freq.
HAPMAP-LWK180180C=0.71111113
A=0.28888890C/C=0.50000000
A/C=0.42222223
A/A=0.07777778
Pr(chiSq=0.069,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100C=0.89999998
A=0.10000000C/C=0.81999999
A/C=0.16000000
A/A=0.02000000
Pr(chiSq=0.617,df=1)
=0.439
Genotype
Freq.
HAPMAP-MKK286286C=0.63986015
A=0.36013985A/C=0.45454547
C/C=0.41258740
A/A=0.13286713
Pr(chiSq=0.027,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI174174C=0.72988504
A=0.27011493C/C=0.52873564
A/C=0.40229884
A/A=0.06896552
Pr(chiSq=0.036,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss43812518 back to top
There is no individual genotype data for ss43812518.

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