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Submitted SNP(ss) Details: ss5236553           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC1748346
RefSNP(rs#)rs3860745
Submitted Batch IDTSC-CSHL-Sep-19-2002-SNP_SUBMISSION-31
Submitted DateSep 20, 2002
Publication CitedN.D.
First entry to dbSNPSep 20 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-CSHL-31
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/!a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5236553|allelePos=501|len=1001|taxid=9606|alleles='C/G'|mol=Genomic
 CTGTATTCCT TCTTTCAAAG CATTTCTACA TTTCTACATT AATTAGCATC AGGATTTGCT
 TAatatctgt gcccttcatt aaactgtcag tttcatgaaa agtatggcta tgtctctttt
 ggcttagtat tgtatcttta ttgcttatga caatgcctgg catgcagcaa acatgtagaa
 atatacttgt ttgatactga atTAAGGAcc agggttctaa tccaggtctg tgattttcca
 gaagtgttaa gttgggcaga ttacttaact tctctgaact gtttcttcat aggtaaaatg
 ggcatcttaa tCTGTGTTCC CTAGGAAGCA GGGCCTAAGA CAAAGTCTTT GGTGCTTTAT
 TAGGGAGTGC AACAGCTGGG AGCAGAAGCT AGTGGAGGGA AGCGAGGAGT GAAGGGGTCG
 TTGAGCTTGC TGGAGCTAAA TGCTACTGAG AAGTTGTATA AACGATCTCA GGACAGTTCA
 TGTGAGGAAA GAAAGGGGTC
 S
 TGTTATCCAC CTGCTTGAAG TGCTTACTCT CCCACACTTG TAGGTAGGCA TGGAGGTGCT
 GCCAGACCGC ACTGCATGAG ATGGTTGCAG TCCATGTGGA GCTGGTCAGC ACAGCAGCAG
 CACCTAACCT GCAGGGTCCT GGTGGGGGTT GCTGGAGACC GCGCCTGGCA CATCTCAGCA
 GGCAATAAAC AAACAATCAA ggccaggcgc ggtggctcat gcctgtaatc ccggcacttt
 gggaggccga ggctgctgga ttgctgaggt caggagttca agaccagtct ggccacatgg
 tgaaaccccg tctctactaa aaatacaaaa attagctggg cgtgccggcg cggggggtca
 cgcctgtaat tccagacttt gggaggccga ggGGGCAATT ACCGGAGGGC GGGGTTGGAC
 AGCTGGCTTG GGGAGNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
 NNNNNNNNNN NNNNNNNNNN

  Submitted Frequency for ss5236553 back to top
There is no frequency submission for ss5236553.


  dbSNP summary of Genotypes for ss5236553 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI226226C=0.80973452
G=0.19026549C/C=0.67256635
C/G=0.27433628
G/G=0.05309734
Pr(chiSq=1.359,df=1)
=0.251
Genotype
Freq.
HAPMAP-ASW9898C=0.81632656
G=0.18367347C/C=0.69387758
C/G=0.24489796
G/G=0.06122449
Pr(chiSq=1.647,df=1)
=0.200
Genotype
Freq.
HAPMAP-LWK180180C=0.87777776
G=0.12222222C/C=0.77777779
C/G=0.20000000
G/G=0.02222222
Pr(chiSq=0.415,df=1)
=0.527
Genotype
Freq.
HAPMAP-MKK286286C=0.95454544
G=0.04545455C/C=0.90909094
C/G=0.09090909
Pr(chiSq=0.029,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5236553 back to top
There is no individual genotype data for ss5236553.

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