Submitted SNP(ss) Details: ss5586188

Submitted SNP(ss) Details: ss5586188

Submitter
Handle	SNP500CANCER
Submitter SNP ID	ADH1B-01
RefSNP(rs#)	rs2066702
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
GenBank Accession	NT_006397.13
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	ADH1B-01

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	T:Germline C:Germline
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Platform: Sequencing Primer F: TCACTAAGACACCTCAGATGC, Temp: 55.46, GC Content:47.62, Product Size: 244 Primer R: CCCCCATGTGTAATTTATTG, Temp: 55.32, GC Content:40

Fasta sequence (Legend)

 TTAAGATTGg agaaaaaaag aaaagaaaag aaaaCCAAAA AAGATGAACT TCCTTTTTCT
 TGAACCAAAT GTATGGGGAT GGAAATAGGG TAGCTGGGAT CACAGACAGA TTTTCACTAA
 GACACCTCAG ATGCTCCTTG GACTCTCACA ACAAGCATGT GGGTTGTCTA AATGTTAACA
 CAATGTCTCT TCTTTCCTAT TGCAGTATC
 Y
 GTACCGTCCT GACGTTTTGA GGCAATAGAG ATGCCTTCCC CTGTAGCAGT CTTCAGCCTC
 CTCTACCCTA CRAGATCTGG AGCAACAGCT AGGAAATATC ATTAATTCAG CTCTTCAGAG
 ATGTTATCAA TAAATTACAC ATGGGGGCTT TCCAAAGAAA TGGAAATTGA TGGGAAATTA
 TTTTTCAGGA AAATTTAAAA TTCAAGTGAG AA

Submitted Frequency for ss5586188

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
HISP1 - MULTI-NATIONAL	46	C=1.00000000	T=0.00000000		C/C=1.00000000 C/T=0.00000000 T/T=0.00000000		08272003	SNP500CANCER
P1 - MULTI-NATIONAL	202	C=0.95999998	T=0.04000000	0.077 +/-0.036	C/C=0.93099999 C/T=0.05900000 T/T=0.01000000	0.059	08272003	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	C=1.00000000	T=0.00000000		C/C=1.00000000 C/T=0.00000000 T/T=0.00000000		08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C=0.83300000	T=0.16700000	0.278 +/-0.101	C/C=0.70800000 C/T=0.25000000 T/T=0.04200000	0.250	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	60	C=1.00000000	T=0.00000000		C/C=1.00000000 C/T=0.00000000 T/T=0.00000000		08272003	SNP500CANCER

dbSNP summary of Genotypes for ss5586188

No sufficient data to compute Hardy-weinberg probability for ss5586188.

Submitted individual genotype for ss5586188

There is no individual genotype data for ss5586188.

Disclaimer Privacy statement