Submitted SNP(ss) Details: ss5586191

Submitted SNP(ss) Details: ss5586191

Submitter
Handle	SNP500CANCER
Submitter SNP ID	ADH1B-04
RefSNP(rs#)	rs1041969
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
GenBank Accession	NT_006397.13
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	ADH1B-04

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 6
Genotype Summary	population count: 11
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Platform: Sequencing Primer F: TGAATAACCTTGGGGATAAAC, Temp: 47.9, GC Content:38.1, Product Size: 397 Primer R: CACTTTCGTCTCTCATTGC, Temp: 45.1, GC Content:47.37

Fasta sequence (Legend)

 TACATTTTAG AAACACAATT TCAGGAATTT GGGTATGTTA AATTCATCTA GTTACAATCT
 TTTCTGAATC TGAACAGCTT CTCTTTATTC TGTAGATGGT GGCTGTAGGA ATCTGTCRCA
 CAGATGACCA CGTGGTTAGT GGCAA
 M
 CTGGTGWCCC CCCTTCCTGT GATTTTAGGC CATGAGGCAG CCGGCATCGT GGAGAGTGTT
 GGAGAAGGGG TGACTACAGT CAAACCAGGT ACAGGATTCA CACTCAGGGA ACACGTGTGG
 TTCACCATCC AGGATTTCCC AGCCTGGATA AGGAAACCAA GGCAATGAGA GACGAAAGTG
 CTTGCACAAG

Submitted Frequency for ss5586191

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	Submission Batch	Submitter
CAUC1 - MULTI-NATIONAL	62	C=1.00000000		C/C=1.00000000	08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C=1.00000000		C/C=1.00000000	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	C=1.00000000		C/C=1.00000000	08272003	SNP500CANCER
P1 - MULTI-NATIONAL	202	C=1.00000000		C/C=1.00000000	08272003	SNP500CANCER
PAC1 - MULTI-NATIONAL	46	C=1.00000000		C/C=1.00000000	08272003	SNP500CANCER
CEPH - MULTI-NATIONAL	184	C=1.00000000	A=0.00000000		1_2004	SEQUENOM

dbSNP summary of Genotypes for ss5586191

No sufficient data to compute Hardy-weinberg probability for ss5586191.

Submitted individual genotype for ss5586191

There is no individual genotype data for ss5586191.

Disclaimer Privacy statement