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Submitted SNP(ss) Details: ss5586194           
Submitter
HandleSNP500CANCER
Submitter SNP IDADH1C-03
RefSNP(rs#)rs1042756
Submitted Batch ID08272003_update
Submitted DateOct 28, 2003
Publication CitedN.D.
First entry to dbSNPSep 26 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQUENCING
Ascertainment Samplesize204
PopulationP1
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Platform: Sequencing Primer F: TGAGAGAGAGAATAACTAAGGACCC, Temp: 51.4, GC Content:44, Product Size: 352 Primer R: TTTCCAGAGCGAAGCAGG, Temp: 51.4, GC Content:55.56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5586194|allelePos=104|len=204|taxid=9606|alleles='G/C'|mol=Genomic
 CATTTATTTG GAAAATCTTC TCTTCAATTC TCCTACTTAC CCTGGTTGAA TCTATCAATG
 ATATTTTCTT CTTTTCAGGC TTTAAGAGTA AAGAATCTGT CCC
 S
 AAACTTGTGG CTGACTTTAT GGCTAAGAAG TTTTCACTGG ATGCATTAAT AACAAATRTT
 TTACCTTTTG AAAAAATAAA TGAAGGATTT GACCTGCTTC

  Submitted Frequency for ss5586194 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PAC1
MULTI-NATIONAL
46C=1.00000000
C/C=1.00000000
08272003SNP500CANCER
AFR1
MULTI-NATIONAL
48C=1.00000000
C/C=1.00000000
08272003SNP500CANCER
CAUC1
MULTI-NATIONAL
62C=1.00000000
C/C=1.00000000
08272003SNP500CANCER
P1
MULTI-NATIONAL
202C=1.00000000
C/C=1.00000000
08272003SNP500CANCER
HISP1
MULTI-NATIONAL
46C=1.00000000
C/C=1.00000000
08272003SNP500CANCER


  dbSNP summary of Genotypes for ss5586194 back to top
No sufficient data to compute Hardy-weinberg probability for ss5586194.


  Submitted individual genotype for ss5586194 back to top
There is no individual genotype data for ss5586194.