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Submitted SNP(ss) Details: ss5586203           
Submitter
HandleSNP500CANCER
Submitter SNP IDPARP1-11
RefSNP(rs#)rs1144843
Submitted Batch ID08272003_update
Submitted DateOct 28, 2003
Publication CitedN.D.
First entry to dbSNPSep 26 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQUENCING
Ascertainment Samplesize204
PopulationP1
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Platform: Sequencing Primer F: GTTCTCAAAGGACCACCAG, Temp: 46.4, GC Content:52.63, Product Size: 417 Primer R: TGCCATTCACTGTGTTGG, Temp: 47.4, GC Content:50

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5586203|allelePos=313|len=900|taxid=9606|alleles='A/C'|mol=Genomic
 AGAGCTGTTG GAGAGGGACA GCCTCTCCCT CATAACAGCA TCTTCCTCCC CATTTTCCCT
 CCCTGCCTTT TAAGACAGCT CCTGGCTCAG GACCCATTTG TCTAAAGTAC CTTCACTGTA
 GGTCCCAAAT GTCAGCATGT ACGAGAGGAA AGACAGTTCT TCCACCTCTC AACTCCCCCA
 GGCCACAAGG CCTTGTTAAC ATTCCAGAAA GTCCTTATGA GCTCTCAATA TGTGCAGCAG
 GTAACAGGCT GGCCCTGACC AGCAGGAGGG TTTGCCATTC ACTGTGTTGG ACCTTCTCTG
 CATGTAGGTT TT
 M
 TCTGCCACCT GGGTGAGTCT GTCTCATTCA CCATGATACC TAAGTCGGGG GCTTTCTTTT
 GCTCCTCCAG GCCAAGGYGG AAATGCTTGA CAACCTGCTG GACATCGAGG TGGCCTACAG
 TCTGCTCAGG GGAGGGTCTG ATGATAGCAG CAAGGATCCC ATCGATGTCA ACTATGAGAA
 GCTCAAAACT GACATTAAGG TAACAGGGTC AGGCCTTCCT CAAGCATCTT AACCTCTCAT
 CCTGAGAGca gcggtcccaa acttccatgt gtgttaggat ctcctggaaa gcttgttaaa
 acacaggtgg ctggcgccca ataattcact tttctaacaa gttcccggac attgctgctg
 gtggtccttt gagaaccTTT GGGCGTTTCA CGTGTAGATA ATGCACCTTG TTTGCAAGGC
 AGCCTTCCAA GCCAGCACCT CAGCTTGGCG TACAAATTTA TTTTTGAGGG TCTTACCAAA
 AGTTCTTTtt tgtttgtttg tttgtttgtt tCCTCTCCTT AATCTAGAGA GGAGCTCTGT
 TTTTCTAAAC CCTTGTAGCG TGAACTTTTA GAAGACTTAT TACCGGT

  Submitted Frequency for ss5586203 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PAC1
MULTI-NATIONAL
48C=1.00000000
C/C=1.00000000
08272003SNP500CANCER
AFR1
MULTI-NATIONAL
48C=1.00000000
C/C=1.00000000
08272003SNP500CANCER
CAUC1
MULTI-NATIONAL
60C=1.00000000
C/C=1.00000000
08272003SNP500CANCER
P1
MULTI-NATIONAL
202C=1.00000000
C/C=1.00000000
08272003SNP500CANCER
HISP1
MULTI-NATIONAL
46C=1.00000000
C/C=1.00000000
08272003SNP500CANCER


  dbSNP summary of Genotypes for ss5586203 back to top
No sufficient data to compute Hardy-weinberg probability for ss5586203.


  Submitted individual genotype for ss5586203 back to top
There is no individual genotype data for ss5586203.