Submitter | Handle | SNP500CANCER | Submitter SNP ID | PARP1-13 | RefSNP(rs#) | rs747657 | Submitted Batch ID | 08272003_update | Submitted Date | Oct 28, 2003 | Publication Cited | N.D. | First entry to dbSNP | Sep 26 2002 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_004525.13
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | PARP1-13 |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | SEQUENCING | Ascertainment Samplesize | 204 | Population | P1 |
| Allele | Observed Allele | C/G | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | Unknown |
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Comment | Platform: Sequencing Primer F: CCAAACAACAACAACAACGC, Temp: 51.4, GC Content:45, Product Size: 379 Primer R: CCAGAAACTCAGGAGGGAG, Temp: 48.4, GC Content:57.89 Platform: TaqMan Forward primer: CCAACAGTTTCATTAGG, Amount: 900 nM Reverse primer: CCAACAGTTTGATTAGG, Amount: 900 nM Probe 1: CTTCACACTGGGCTCTCGAAA, Amount: 200 nM Probe 2: GGGTTTTGTGGACTTTTATCTCATCT, Amount: 200 nM Annealing temperature: 60 C
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>gnl|dbSNP|ss5586205|allelePos=433|len=1053|taxid=9606|alleles='C/G'|mol=Genomic GATGATCCCC CAGGCCGCCT CCTCCACTCA CCAGTGTTTC AGTTTTCTTA GACCAACCCA
AATGGAACTG GAATTTTAAT TCCACTTCCA GATTCTCCAT AGAGAAAGAT CTGATTAGTC
CAGCTTGATT TGGACATCGA CCCTAGTCCT GTGAACTGTA ACCAAAAGCA CAAGGTCATG
TAAAAGGCCA GGGGTCTGGG GACTGTGGAA TGTGGACGGA AACCTAGAGC TGCTGACCAC
CACTCCAAAT AGGGCCTTGC CTTGAAAATG GCCCCATAGC AGTGATCGCT GGGCACAAAC
TATGTTCAGC CGCAACTGCA GTTTCAGGTT CTGGAACAGT TCCAGAAACT CAGGAGGGAG
CCTGAGCAGT TTAGATGGTC TGGGTTTTGT GGACTTTTAT CTCATCTCTG TATCTGATCT
TATTCTCCTA AT
S
AAACTGTTGG TTTCGAGAGC CCAGTGTGAA GGCCTCTTCT GAGACTGTCC TCTTTTGAAT
AGGTATGAAC TGAAGCACGC TTCACATATC AGCARGTTAC CCAAGGGCAA GCACAGTGTC
AAAGGTAAAG TGTTTCCAAA GCTGTTGCTA CAGCCCGAGG CACCCTGGAC AGCACAGAAG
CCRGGGGCTT GCTGTCCTGA GAAGGCTGCC TTGTGGCTGG CTGTCAAACA GCTGGAGATT
CATTTTATCT TTTCGAGGGG TGTGTGTGCG TTGTTGTTGT TGTTTGGGGG GTGGTGGTGG
TGGTTAATAT GCTGCAACTG ACCATGATTG GAGGTTCatt ttatttattt ttgtaaaaaa
aaaaaaaaaa taGGCAAGCT CTATAGCAGG AGGTTCATTT TTAAAAACAG TTCACTCTCT
GTGGCTGCAG CTGGTATCAC AGATGCCACA GGAGAATCTT GGTGCAGGCA CCAGTAACCA
GATGCACGGG TTTCGGCTTT AACCTAACTT GTAGCTACAG CAGTGAGGGA CCTCTCGTGA
CATAGTAGTG CCTGGAGCAT CTTGGATTGC TAGAATTTGC AGCATATGAT TTAGAACCTT
CCACTGCCTG GTTGAAGTGG
No sufficient data to compute Hardy-weinberg probability for ss5586205.
There is no individual genotype data for ss5586205.
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