Submitter | Handle | SNP500CANCER | Submitter SNP ID | PARP4-09 | RefSNP(rs#) | rs4986819 | Submitted Batch ID | 08272003_update | Submitted Date | Oct 28, 2003 | Publication Cited | N.D. | First entry to dbSNP | Sep 26 2002 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_009799.11
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | PARP4-09 |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | SEQUENCING | Ascertainment Samplesize | 204 | Population | P1 |
| Allele | Observed Allele | G/C | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | Unknown |
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Comment | Platform: Sequencing Primer F: TATTTCACTTTTCAACCACG, Temp: 45.4, GC Content:35, Product Size: 363 Primer R: ACAGGATACAGTAGAGAAGATTTG, Temp: 46.2, GC Content:37.5 Platform: TaqMan Forward primer: AGAAAGTTGTCTTACTCTAC, Amount: 900 nM Reverse primer: AGAAAGTTGTCTTAGTCTAC, Amount: 900 nM Probe 1: CGGCATCTCAATAGACATAGTCAAAG, Amount: 200 nM Probe 2: TGGTTTTCTGGTTTAAATTTCCATTTAG, Amount: 200 nM Annealing temperature: 60 C
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>gnl|dbSNP|ss5586213|allelePos=144|len=325|taxid=9606|alleles='G/C'|mol=Genomic ATTTGTATAA AAGAAATAGG AACAAAGCAA AGGTTAGTAC CTAAAATATA AAACCTGTCA
ATTCAATGGA TATTGGTTTT CTGGTTTAAA TTTCCATTTA GAATTGTTTG AAATAATTTC
AGATAGAAAT TTAAGATYGT AGA
S
TAAGACAACT TTCTCTTCAT TTTTGCTAGC TTCTCTTTGA CTATGTCTAT TGAGATGCCG
TATGTGATTG AATTCATTTT CAGTGATACA CATGAACTGA AACAAAAGGT TAGTGCATCT
TTGATTTCTT AAGAGCTGTT ATTTTAACAC TACTTTTATC TTATCAAAGC AATGTATGCA
C
No sufficient data to compute Hardy-weinberg probability for ss5586213.
There is no individual genotype data for ss5586213.
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