| Submitter | | Handle | SNP500CANCER | | Submitter SNP ID | GPX1-06 | | RefSNP(rs#) | rs1800668 | | Submitted Batch ID | 09022003_update | | Submitted Date | Oct 31, 2003 | | Publication Cited | N.D. | | First entry to dbSNP | Sep 26 2002 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_034535.2
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | GPX1-06 |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | SEQUENCING | | Ascertainment Samplesize | 204 | | Population | P1 |
| | Allele | | Observed Allele | T/C | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
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| Comment | Platform: MGB Eclipse Forward primer: CAAGCA*CTATA*A*GGG*G, Amount: 100 nM Reverse primer: CAAGCA*CTGTA*A*GGG*, Amount: 2000 nM Probe 1: CCCGGAAAACTGCCTGTG Probe 2: CTAGCCGAGCAGCACACAT Annealing temperature: 58 C
Platform: Sequenom Forward primer: ACGTTGGATGAGTTAAAAGGAGGCGCCTGC, Concentration: 200 nM Reverse primer: ACGTTGGATGTGGCGCAATTGTCCAAGAAG, Concentration: 200 nM Extension probe: GCGCCCCGAACAAGCACT, Mass: 5438.5, Concentration: 600 nM, Terminator: ACT, Strand: - Extension products: Extension product 1: GCGCCCCGAACAAGCACTA, Mass: 5735.8, Allele: T Extension product 2: GCGCCCCGAACAAGCACTGT, Mass: 6056, Allele: C Pause: GCGCCCCGAACAAGCACTG, Mass: 5767.8
Platform: TaqMan Forward primer: CCCTTACAGTGCTTG, Amount: 900 nM Reverse primer: CCGCCGGCCAGTTAAAA, Amount: 900 nM Probe 1: CCTCCCCTTATAGTGC, Amount: 200 nM Probe 2: TGGCGCAATTGTCCAAGAA, Amount: 200 nM Annealing temperature: 60 C
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>gnl|dbSNP|ss5586551|allelePos=301|len=601|taxid=9606|alleles='T/C'|mol=Genomic ATCCTAACTC AGGAACCTCT GAGAAAAAAC GGAGCCCTCG AGGGGCCCAG CTTGGAAGGG
TAACCTGGAC CGCTGCCGCC TGGTTGCCTG GGCCAGACCA GACATGCCTG CTGCTCCTTC
CGGCTTAGGA GGAGCACGCG TCCCGCTCGG GCGCACTCTC CAGCCTTTTC CTGGCTGAGG
AGGGGCCGAG CCTCCGGGTA GGGCGGGGGC GGATGAGGCG GGACCCTCAG GCCCGGAAAA
CTGCCTGTGC CACGTGACCC GCCGGCCAGT TAAAAGGAGG CGCCTGCTGG CCTCCCCTTA
Y
AGTGCTTGTT CGGGGCGCTC CGCTGGCTTC TTGGACAATT GCGCCATGTG TGCTGCTCGG
CTAGCGGCGG CGGCGGCCCA GTCGGTGTAT GCCTTCTCGG CGCGCCCGTT GGCCGGCGGG
GAGCCTGTGA GCCTGGGCTC CCTGCGGGGC AAGGTACTAC TTATCGAGAA TGTGGCGTCC
CTCTGAGGCA CCACGGTCCG GGACTACACC CAGATGAACG AGCTGCAGCG GCGCCTCGGA
CCCCGGGGCC TGGTGGTGCT CGGCTTCCCG TGCAACCAGT TTGGGCATCA GGTGCGCCGG
No sufficient data to compute Hardy-weinberg probability for ss5586551.
There is no individual genotype data for ss5586551.
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