Submitted SNP(ss) Details: ss5586896

Submitted SNP(ss) Details: ss5586896

Submitter
Handle	SNP500CANCER
Submitter SNP ID	RAD23B-04
RefSNP(rs#)	rs1805329
Submitted Batch ID	09022003_update
Submitted Date	Oct 31, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
GenBank Accession	NT_037744.1
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	RAD23B-04

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Platform: TaqMan Forward primer: AGAGAAAGTCAGGCTGTGGTTGA, Amount: 900 nM Reverse primer: CTGAGGAACCCCAGTAC, Amount: 900 nM Probe 1: CTGAGGAGCCCCAGTA, Amount: 200 nM Probe 2: TGTAGTTGTTGCTGTCGTAGTTGCT, Amount: 200 nM Annealing temperature: 60 C

Fasta sequence (Legend)

 GAAAATCAAA CAAGATGTTA AATAGACTAT AAATCTTTTA CTCTGTATAA TATTTAATTT
 TGCATGATGG GATATCTTAA AGCTTGGAAA TTCTATTAYA GGGAATCCCT GGAGATAGAG
 AAAGTCAGGC TGTGGTTGAC CCCCCTCAAG CAGCTAGTAC TGGGG
 Y
 TCCTCAGTCT TCAGCAGTGG CTGCAGCTGC AGCAACTACG ACAGCAACAA CTACAACAAC
 AAGTTCTGGA GGTAAAGCGG AATCTTCTGG ATGGGGAGGG AATGGCCCTG AATTTTTAGT
 GTAAAATAAT TTAACCTGAA ATACTTCAGA AATGACGTTC ATTCCCAGAG CAGTCGAATA
 ATTCGTTAAG TTCTCTCTTC ACTAATGTTT GAGAAAGGCC CAAAAGAAAC TTTCCCAAGT
 GGATGTA

Submitted Frequency for ss5586896

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PAC1 - MULTI-NATIONAL	48	C=0.81300002	T=0.18700001	0.304 +/-0.100	C/C=0.66700000 C/T=0.29200000 T/T=0.04100000	0.292	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	C=0.73900002	T=0.26100001	0.386 +/-0.088	C/C=0.56500000 C/T=0.34799999 T/T=0.08700000	0.348	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C=0.79000002	T=0.20999999	0.332 +/-0.085	C/C=0.61299998 C/T=0.35499999 T/T=0.03200000	0.355	08272003	SNP500CANCER
P1 - MULTI-NATIONAL	204	C=0.81900001	T=0.18099999	0.296 +/-0.049	C/C=0.67600000 C/T=0.28400001 T/T=0.04000000	0.284	08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C=0.93800002	T=0.06200000	0.116 +/-0.086	C/C=0.87500000 C/T=0.12500000 T/T=0.00000000	0.125	08272003	SNP500CANCER

dbSNP summary of Genotypes for ss5586896

No sufficient data to compute Hardy-weinberg probability for ss5586896.

Submitted individual genotype for ss5586896

There is no individual genotype data for ss5586896.

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