Submitted SNP(ss) Details: ss5586947

Submitted SNP(ss) Details: ss5586947

Submitter
Handle	SNP500CANCER
Submitter SNP ID	TP53-01
RefSNP(rs#)	rs1042522
Submitted Batch ID	09022003_update
Submitted Date	Oct 31, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
GenBank Accession	NT_035416.2
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	TP53-01

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	G:Germline A:Germline C:Germline
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment

Platform: Sequencing Primer F: CCCATCTACAGTCCCCCTTG, Temp: 53.2, GC Content:60, Product Size: 372 Primer R: CAAAGTTCCAAACAAAAGAAATG, Temp: 50.5, GC Content:30.43
Platform: Sequencing Primer F: CCTCTGACTGCTCTTTTCAC, Temp: 55.14, GC Content:50, Product Size: 230 Primer R: GAAGGGACAGAAGATGACAG, Temp: 54.7, GC Content:50
Platform: TaqMan Forward primer: ATGAAGCTCCCAGAATGC, Amount: 700 nM Reverse primer: CTGCTCCCCCCGTGGCCC, Amount: 700 nM Probe 1: CTGCTCCCCGCGTGGCCC, Amount: 100 nM Probe 2: GCCGGTGTAGGAGCT, Amount: 100 nM Annealing temperature: 60 C

Fasta sequence (Legend)

 CCATCTACAG TCCCCCTTGC CRTCCCAAGC AATGGATGAT TTGATGCTGT CCYCGGACGA
 TATTGAACAA TGGTTCACTG AAGACCCAGG TCCAGATGAA GCTCCCAGAA TGCCAGAGGC
 TGCTCCCC
 S
 CGTGGCCCCT GCACCAGCAG CTCCTACACC GGCGGCCCCT GCACCAGCCC CCTCCTGGCC
 CCTGTCATCT TCTGTCCCTT CCCAGAAAAC CTACCAGGGC AGCTACGGTT TCCGTCTGGG
 CTTCTTGCAT TCTGGGACAG CCAAGTCTGT GACTTGCACG GTCAGTTGCC CTGAGGGGCT
 GGCTTCCAT

Submitted Frequency for ss5586947

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
AFR1 - MULTI-NATIONAL	48	C=0.70800000	G=0.29200000	0.413 +/-0.077	C/G=0.50000000 C/C=0.45800000 G/G=0.04200000	0.500	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46		C=0.30399999	0.423 +/-0.075	G/G=0.56500000 C/G=0.26100001 C/C=0.17399999	0.261	08272003	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	C=0.60399997	G=0.39600000	0.478 +/-0.042	C/G=0.54200000 C/C=0.33300000 G/G=0.12500000	0.542	08272003	SNP500CANCER
P1 - MULTI-NATIONAL	204	G=0.53899997	C=0.46100000	0.497 +/-0.008	C/G=0.39199999 G/G=0.34299999 C/C=0.26499999	0.392	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G=0.72600001	C=0.27399999	0.398 +/-0.072	G/G=0.58099997 C/G=0.28999999 C/C=0.12899999	0.290	08272003	SNP500CANCER

dbSNP summary of Genotypes for ss5586947

No sufficient data to compute Hardy-weinberg probability for ss5586947.

Submitted individual genotype for ss5586947

There is no individual genotype data for ss5586947.

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