Submitted SNP(ss) Details: ss5609953

Submitted SNP(ss) Details: ss5609953

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004321.12_538474
RefSNP(rs#)	rs3923081
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004321.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:XAW53D05.G1POSITION:438QUALITY:40

Fasta sequence (Legend)

 TGACACTCTC TGCATCCTCC TCAAGGTCAC GTGCTGGGTA CAGTCCCAAG CTCGAGGCAT
 CCTTGGCACA GCACTCCATC TCTGCTGGGA TGAGACAGCC TTTCTCAGAG ACCACTTCCC
 TCCAGGTTGT GAACGGTTCT AACCATTCAG CTCTCTGATC TCTGCAGCTC CAGCACATCA
 CAAGCAAGGG GGAAGTACTC
 R
 CTGGGGGAGT TAGCCAAGGG CCATCAGGGC CACATGTCCT GACAGCAAAG AGATGGGACC
 TGCCACACAA GCCAGCTCCA AAGACCGCTG GGCCATCTGC AGTGGGCAGT TCAGTGCTGG
 GGACATCACA GCATCACTGC ACATAATCAG TGATAATGAC ACCCACATTG CAGGTATTTC
 TCTTATTTAA GGAGGCCAAG

Submitted Frequency for ss5609953

There is no frequency submission for ss5609953.

dbSNP summary of Genotypes for ss5609953

No sufficient data to compute Hardy-weinberg probability for ss5609953.

Submitted individual genotype for ss5609953

There is no individual genotype data for ss5609953.

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