Submitted SNP(ss) Details: ss5609965

Submitted SNP(ss) Details: ss5609965

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004433.12_1164390
RefSNP(rs#)	rs1294197
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004433.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:S144P6447532RC10.T0.SCFPOSITION:242QUALITY:33

Fasta sequence (Legend)

 Tccttgcagt ctccaaaatg ttaactgcct ttttgtatgc taatgagttg actagcggct
 gtcagcccct agatggcttc aagatggggc tggtcactgg aaagaccaag gcatgattag
 agggttgagg ctttcagcct caactagtgc tgaaggttaa gttggttgcc agtggtcaat
 gatttaatca attatgccta
 Y
 gtaatgaagc ctccttataa tcccaaaagg acagagtttg ggagcttcca gaaagctgaa
 cttgtggagg tttctggagg gtgacaaacc cagggagagc atggaagctc cacaagcctc
 ccccctgacc tccccttaaa catgtcttca tctctctctt ttgtaatatc ctttacagta
 aacaaaaagt gtttttctaa

Submitted Frequency for ss5609965

There is no frequency submission for ss5609965.

dbSNP summary of Genotypes for ss5609965

No sufficient data to compute Hardy-weinberg probability for ss5609965.

Submitted individual genotype for ss5609965

There is no individual genotype data for ss5609965.

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