Submitted SNP(ss) Details: ss5609966

Submitted SNP(ss) Details: ss5609966

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004433.12_1461036
RefSNP(rs#)	clustering in process
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004433.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:P1_3A978D06.P1CSCFPOSITION:448QUALITY:46

Fasta sequence (Legend)

 ttaaaaggcc atgctgtagc aggcgagtga taacaggctt taatcctttt aaagcgtgct
 gtgggatggg atcttgacat tgagtggggt aagggtgatt aggttttaat gagatggtaa
 ggggtgcatg atcggtcgcc aaggagggag tagaggtatc ttatacttgt gggttaaggt
 ggggggatac aagaggagga
 Y
 gcaaaggagg ctttggattg ggaagaaggg tggcaatgag gtgtggctgt agtccaggaa
 tagtcaggga agcagataat ttagttaaag tgtctcagcc taataaggga actgggcagg
 tggggataac taaaaaggag tgcttaaaag agtattgtct aagttggcac cagagttgag
 gagttttaag aggtttagaa

Submitted Frequency for ss5609966

There is no frequency submission for ss5609966.

dbSNP summary of Genotypes for ss5609966

No sufficient data to compute Hardy-weinberg probability for ss5609966.

Submitted individual genotype for ss5609966

There is no individual genotype data for ss5609966.

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