Submitted SNP(ss) Details: ss5609968

Submitted SNP(ss) Details: ss5609968

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004434.12_206339
RefSNP(rs#)	rs3867817
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004434.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	3
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:S124P142FH1.T0.SCFPOSITION:294QUALITY:51SEQUENCE:S124P306FH12.T0.SCFPOSITION:296QUALITY:50

Fasta sequence (Legend)

 Tcaagaaggt gcagtacttg tacacagaca actacagaac attgctcgag gagattcagg
 aagacctaaa tcaatggaca gacatcttgt gtccatgggt tggaagttgt aacatggtta
 agataaaaat acaactcaaa gcaacccaca gattcaatac aatcctatca agaagtggcc
 ttttttacag gaatgcctaa
 S
 aagaacttca tattcctaaa aaatagtgtg tccccccaaa acaaaagcaa tcttgaaatg
 caagaagaaA CATTTTCTAT TCCAAAGGTC TTTAACTGCT CTAAGCAGTA CTTGGTAGTC
 TTCAATATAT AGGCTTTCAC ATCTCTtttt ttcttctttt gtttctgcac aggatctcac
 tctttcaccc aggctggagt

Submitted Frequency for ss5609968

There is no frequency submission for ss5609968.

dbSNP summary of Genotypes for ss5609968

No sufficient data to compute Hardy-weinberg probability for ss5609968.

Submitted individual genotype for ss5609968

There is no individual genotype data for ss5609968.

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