Submitted SNP(ss) Details: ss5609974

Submitted SNP(ss) Details: ss5609974

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004441.12_682903
RefSNP(rs#)	rs719081
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004441.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	6
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/!a

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:S115P74FC9.T0.SCFPOSITION:45QUALITY:28SEQUENCE:S115P74FC9.T1.SCFPOSITION:45QUALITY:28SEQUENCE:S115P1506FF11.T0.SCFPOSITION:74QUALITY:23SEQUENCE:S116P1431FD3.T0.SCFPOSITION:72QUALITY:34SEQUENCE:JBC59D12.G1POSITION:372QUALITY:40

Fasta sequence (Legend)

 ttgtattttt agtagagaca gggtctcacc atgttagtca ggctggtctc gaactcctga
 tctcaagcaa tccacctgcc ttggcctccc aaagtactgg gattacaggc atgaaccact
 gcgcccACCC CTATTTACTT TGGACATTGT CATGGAAGGA GCTGTGCTTA TTGCTTCTCA
 AGAAGAGAGA AAAGAATTAC
 M
 GTGAAACTGG AATGGTTGAG CTGCAGGGAT CTCTTATCTC TAGATTTCTT ATTATATGAG
 ATAATAAACT TATATTTATA ATCCACTTTA AACCAGTTAT TTTATTTGTT TACAACTGGA
 AGGATCTCAA ATGGTACAAA TTTCCTTTTC CAAGACTATT CCTATTCCAA GAATAATATT
 CTTGGAATTC CTATTCCAAT

Submitted Frequency for ss5609974

There is no frequency submission for ss5609974.

dbSNP summary of Genotypes for ss5609974

No sufficient data to compute Hardy-weinberg probability for ss5609974.

Submitted individual genotype for ss5609974

There is no individual genotype data for ss5609974.

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