Submitted SNP(ss) Details: ss5609978

Submitted SNP(ss) Details: ss5609978

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004464.12_6424851
RefSNP(rs#)	rs1475679
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004464.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:XCF31A10.B1POSITION:202QUALITY:56

Fasta sequence (Legend)

 TGACTGCATG CAACAGGAAG GATTTCACAT AAATAGAGGA CATGTCATGC AAAAAGCAGA
 AGAAGCAAAA GGCTTGAAAA AGAAAAGTAG AAAGCAAATA AACTCATAAA CATCAAAGAA
 AAAATATTTC TTGAACATCA ACGATTCTAT CATCAGCATC TCTAAGAGTT TTCAACAGTA
 ACTTTCCTGT CCCTGTCTTA
 Y
 TGACAATCTC TCCAGGCTCT TCTGAGAATA GTTAGAAAGT GCTTTGGAGG CCAGAGAGGG
 CCAAGAAATC CCCTCAGAGC TCTTTTTGGC CATCCTTTCT ACTGGATTTC TCTGAGATTT
 CCCAAATGTC TTAAGTCAAT GGCAGTGAGA GTAGTTATTA AACAAGGAAT GCTGTGAACA
 CCTTTATCTT CAGAAGCCAT

Submitted Frequency for ss5609978

There is no frequency submission for ss5609978.

dbSNP summary of Genotypes for ss5609978

No sufficient data to compute Hardy-weinberg probability for ss5609978.

Submitted individual genotype for ss5609978

There is no individual genotype data for ss5609978.

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