NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss61705025           
Submitter
HandleSI_EXO
Submitter SNP IDNT_077569.2_11606692
RefSNP(rs#)rs2281647
Submitted Batch IDSI_EXO_20060629
Submitted DateJul 11, 2006
Publication Cited[1] A SNP-survey of human exons in 48 CEPH samples
First entry to dbSNPJul 11 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSI_EXOSEQ_1
Ascertainment Samplesize18
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
ExoSeq_class:SHW1Estimated_frequency:.25Minor_allele:A

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss61705025|allelePos=401|len=801|taxid=9606|alleles='G/A'|mol=Genomic
 GGGGTGGACA CGGCGGCGCG CAGGAGCTGT TTCCAGGACA ACCGAGGGCC GCCCCACAGT
 GTCCGCCCCA CAGTGTCCGC CCCTTGCGTC TCGCCGCTCC GCCCCTTCCC GGCGCGGGTG
 CTCCAACCAG CCCCCGTGAG CGAATAGAGA GAGGGGTGCT AGATGGACTC TCACCTCTCA
 GCGCGTGGTG CATGCCGCCC ACGCCGCTGT ATAGCTCCAG CACCCGCAGG GGCTCCATCC
 CCGCGCCTCA GCCGCCGCAG CCCCGGAGCT AGGCCTGCCG GTCCGTCGCT CCTCCTCCCT
 CCATCGCGCC GCTCCCTCAG CCTCTGGTTC CGCGGCGTTT CAGTTCCCCC GTCTCCTACC
 GCTCCAGGCT CAGGGCTTCA GAGGGCCTCG CGGCCTGGGG
 R
 TTGGCAAGGG TCTAGAGGGG AACAAAGGAC GGAAAACAAT AAGGCTTCCC GAATGAATGG
 CAGCCACTCT GTAGCCTGAT TTACGCTCCA TTTCCTTCTT TGGTGTCAGG GGCCTTGATT
 GGAAAAGAAA TCCAGAGTTC AGTAAAGGGG AGAAAACTGC CTTGGTTTCC AAGTGAATTA
 ACACTGGTTA GAAGCCAGAA AAAAATCATT TTTCAGACAA GCTGCTTTTC TGTCACTTAG
 AAGCCTGAAC ATTCAAACAT TCTTTCCACA GTGTGCCTTG TTTCCTGCCT GCCCTGGGTC
 AATAGAGAGA AATTAGACCA GCCTCTCCCC TAGAGAAGAT TCCAGAATTA TAAGTAAGGA
 CACAAGTCCA CTCGCAGCAG AGAAAGCCCT GTGTGCGTGC

  Submitted Frequency for ss61705025 back to top
There is no frequency submission for ss61705025.


  dbSNP summary of Genotypes for ss61705025 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226G=0.87610620
A=0.12389380G/G=0.76991153
A/G=0.21238938
A/A=0.01769911
Pr(chiSq=0.053,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.73255813
A=0.26744187A/G=0.48837209
G/G=0.48837209
A/A=0.02325581
Pr(chiSq=2.610,df=1)
=0.150
Genotype
Freq.
HapMap-JPT172172G=0.60465115
A=0.39534885A/G=0.44186047
G/G=0.38372093
A/A=0.17441860
Pr(chiSq=0.494,df=1)
=0.527
Genotype
Freq.
HapMap-YRI226226G=0.59292036
A=0.40707964A/G=0.47787610
G/G=0.35398230
A/A=0.16814159
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898G=0.67346936
A=0.32653061A/G=0.48979592
G/G=0.42857143
A/A=0.08163265
Pr(chiSq=0.633,df=1)
=0.439
Genotype
Freq.
HAPMAP-CHB8282G=0.73170733
A=0.26829270G/G=0.51219511
A/G=0.43902439
A/A=0.04878049
Pr(chiSq=0.573,df=1)
=0.479
Genotype
Freq.
HAPMAP-CHD170170G=0.65882355
A=0.34117648G/G=0.45882353
A/G=0.40000001
A/A=0.14117648
Pr(chiSq=1.033,df=1)
=0.317
Genotype
Freq.
HAPMAP-GIH176176G=0.82954544
A=0.17045455G/G=0.67045456
A/G=0.31818181
A/A=0.01136364
Pr(chiSq=1.378,df=1)
=0.251
Genotype
Freq.
HAPMAP-LWK180180G=0.61111110
A=0.38888890A/G=0.46666667
G/G=0.37777779
A/A=0.15555556
Pr(chiSq=0.030,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX9696G=0.56250000
A=0.43750000A/G=0.54166669
G/G=0.29166666
A/A=0.16666667
Pr(chiSq=0.485,df=1)
=0.527
Genotype
Freq.
HAPMAP-MKK286286G=0.60489511
A=0.39510489G/G=0.43356642
A/G=0.34265736
A/A=0.22377622
Pr(chiSq=11.464,df=1)
=0.001
Genotype
Freq.
HAPMAP-TSI176176G=0.90340906
A=0.09659091G/G=0.81818181
A/G=0.17045455
A/A=0.01136364
Pr(chiSq=0.048,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss61705025 back to top
There is no individual genotype data for ss61705025.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement