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Submitted SNP(ss) Details: ss6396334           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_1068864
RefSNP(rs#)rs2275821
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P84612FH7.T0position:385quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396334|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 GATGGGGAGC AGGACTCTTA CCTGGCGTAC GTTCCTTCTA GAGCAGGGTC CTCGCTGTTG
 TGCCCAAGGT AGTGGTCAAT CAACTTCTCT CGAGAGGCCT TTGGGGGCAA AACATCTGCT
 TAGTGTCTCA GAGAGAAAGA GGAACAACAC AAAACCTTAA CTACAAGATT TATTTCATAT
 AAAGCTGTCA GCAAGGTTCA
 R
 TGATCCTCAT CTTTTGGAGA GACAGCTAAA ACTGTTAAAG AAAAGTTTCA TATGCTACAG
 CTCCTAAAAA TCATCTGAAA GTTATTCACT AGTCAATTTT ATGCAGATTA TAAAAATGAC
 ACATTTTTTG GGTGAAAATA AATGACTCCC TCCCATTATA AATAGATTTA CTTCCTTAGG
 AATTAAAACT TTCCAAACTT

  Submitted Frequency for ss6396334 back to top
There is no frequency submission for ss6396334.


  dbSNP summary of Genotypes for ss6396334 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Caucasian2424G=0.87500000
A=0.12500000G/G=0.75000000
A/G=0.25000000
Pr(chiSq=0.057,df=1)
=1.000
Genotype
Freq.
PDpanel4444G=0.75000000
A=0.25000000G/G=0.54545456
A/G=0.40909091
A/A=0.04545455
Pr(chiSq=0.182,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss6396334 back to top
There is no individual genotype data for ss6396334.