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Submitted SNP(ss) Details: ss6396336           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_1072969
RefSNP(rs#)rs4648347
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P800544FB8.T0position:232quality:40sequence:G248P800544FG8.T0position:235quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396336|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 TGACTTGATC TGCCTGTAAC CCTATAGGAA TCATACTCTT GGCAGCTAGT AAATGGTCTG
 ATGTGAAACC TGCAGTTTTT CATAAGATAA ATCAATCTTA TGAGGCGGCA CTAGTGGGCA
 GGACGGAGCC AAAGGATTTT CCACAGGAAC TCAAATGCTT AAGGGCCCCA AGGTATCAAT
 ATTTAAGGAG TGCCTGCCTT
 Y
 CACGCATAGT GGTCTAGGGA GACAAGCCTA TGCTATGGGC CATGCTGGAG CTTCTTTGCT
 CAAAAGTGAC ATAACttttt tttttttttt ttttgggaaa aggtctcgct ctgtcaccca
 ggctgcagcg gtgtgattat ggctcactgc atctttgatc tcctgggctc aagtgaccct
 cctacctcag cctcctgagG

  Submitted Frequency for ss6396336 back to top
There is no frequency submission for ss6396336.


  dbSNP summary of Genotypes for ss6396336 back to top
No sufficient data to compute Hardy-weinberg probability for ss6396336.


  Submitted individual genotype for ss6396336 back to top
There is no individual genotype data for ss6396336.