NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss6396337           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_1079489
RefSNP(rs#)rs4648348
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P80435FC9.T0position:146quality:35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396337|allelePos=201|len=401|taxid=9606|alleles='T/G'|mol=Genomic
 CATAAATATA GGACCTTTTC AGTCAAACAG AAGGGTGTTT CCAGTATGCT ATACTGCCCC
 CAACAAATCT AAAACAAAGT ACTGGCATTT AAGAACCAGC TAAGAGAAAT GCACAGGGAC
 TGTGGAGGCA ATGCTATTAC CTCAGTCTGG TATTTGAAAA GGATTCCTTT TTTAGTCTAC
 CCCCTCCCAA AGACCTTCCA
 K
 TTGTACCCTA GGGTCCCCTC TGTGTAAACC TTCAAGTGTT ACATAAGATA CTTGGAATGT
 CACTGAAGGA TGCCACTTTT AGGCTCTATA AAAATCACCA TTAACAATTT GGGAAGAAGC
 AAAGCTCTGT TGAACATCCA GTTATTGGCT GGTCTTCCTC ACCAGAGGCA TGAGGGATCC
 CTGTTGTCCC AGGGGCAGCC

  Submitted Frequency for ss6396337 back to top
There is no frequency submission for ss6396337.


  dbSNP summary of Genotypes for ss6396337 back to top
No sufficient data to compute Hardy-weinberg probability for ss6396337.


  Submitted individual genotype for ss6396337 back to top
There is no individual genotype data for ss6396337.