NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss6396338           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_1080153
RefSNP(rs#)rs4648349
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/!a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P8466FB3.T0position:56quality:29

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396338|allelePos=201|len=401|taxid=9606|alleles='C/G'|mol=Genomic
 gaggagggcg tattacttga ggtcaggagt tcgagaccag cctggccaac atggtgaaac
 cccgtctcta ctaaaaataa aaaaattagt cgggctactc gggaggctga ggcaggagaa
 tcgcttgaac ccgggaggcg gaggctgcag tgagctgaga tcgtgccatt gcactccagc
 ctgggcgaca gagcgagacc
 S
 tctcaaaGGC TTATGGGTTT CTGATCAAGT CATCTTAGCG ACTGAAAGGG CTTCAGAGAA
 ATCTGAACTT AAGTGCAAAC AAAACAAAAC AAACTCCAAA ACAAAAAACA ACCAACCATC
 AGACTTTAAT CTCTATAGGG ACAGAGCAAT TTTCCTCAAA CTTTTGCTCA GCAGAACACA
 TCTGAAACTG GCCCCCTATG

  Submitted Frequency for ss6396338 back to top
There is no frequency submission for ss6396338.


  dbSNP summary of Genotypes for ss6396338 back to top
No sufficient data to compute Hardy-weinberg probability for ss6396338.


  Submitted individual genotype for ss6396338 back to top
There is no individual genotype data for ss6396338.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement