NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss6396339           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_1107456
RefSNP(rs#)rs3205087
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P87091FG2.T0position:212quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396339|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 AAAATGATGT CTCTAACCTT ACTTTGCAGA ATAGAAAAGA AACGCACCAT CATTCCTACA
 CTGGTGGAAG CAATTAAGGA ACAAGATGGA AGAGAAGTGG ACTGGGAGTA TTTTTATGGC
 CTGCTTTTTA CCTCAGAGAA CCTAAAACTA GTGCACATTG TCTGCCATAA GAAAACCACC
 CACAAGCTCA ACTGTGACCC
 R
 AGCAGAATCT ACAAACCCCA GACAAGGTTG AAGCGGAAGC AGCCTGTGCG GAAACGCCAG
 TGACACGTAC ACACCACGTC CTGGTCTTTG TTTGAGGCCT GACGTGGGCA TCATTTTAAC
 AGGTGCCTTT TTTGTTTTTT TGTTTTTCGT TTTTTTGGTC ACTCCAGTAG CTCCTGGAAA
 AAACCTTAAA AAATGTTTCC

  Submitted Frequency for ss6396339 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184A=0.63000000
G=0.37000000
0.466 +/-0.0261_2004SEQUENOM


  dbSNP summary of Genotypes for ss6396339 back to top
No sufficient data to compute Hardy-weinberg probability for ss6396339.


  Submitted individual genotype for ss6396339 back to top
There is no individual genotype data for ss6396339.