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Submitted SNP(ss) Details: ss6396340           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_132142
RefSNP(rs#)rs897631
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P802560FC6.T0position:433quality:31

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396340|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 GCTCCGCACA GTGAGGCTGC CACGTGGCCC TGAGGTTGCT TCTGCTGTTC GTGGTTGCCC
 TGGGTGTCTC CTGCCTGGAC CCTGGCCTAG GAGTGGGCAT CAACCAGGCA GAGCAAAGTC
 CAGCTGTACC ACCAGGGCCC ATGTGCGCCT ACCTGGGGCC CGGCTCACAG ACCAGCACGT
 GGTTCTGGCC TGAAAATCCG
 Y
 CTTAGCAAGT CCTGGCGCCA ACTGGGGCCT CCGAGCCTGG GCCCTGCCGG ATCCTGGCTT
 TGTCCAGAAG AGGGTTTTGC CACTGTCAGG GGACCTTGGC GTGCCATATG CTCCGGCCCC
 TGGAAGTCAA GGCTCAGGTC GTGGAGTTAG GTTGAGCTTG GGGATTTTCC AGGTCAGAGA
 ACCTGGGGCA GGTGGGGCTC

  Submitted Frequency for ss6396340 back to top
There is no frequency submission for ss6396340.


  dbSNP summary of Genotypes for ss6396340 back to top
No sufficient data to compute Hardy-weinberg probability for ss6396340.


  Submitted individual genotype for ss6396340 back to top
There is no individual genotype data for ss6396340.