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Submitted SNP(ss) Details: ss6396346           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_155138
RefSNP(rs#)rs4648355
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/!t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P85575RE3.T0position:151quality:41sequence:G248P85572RA5.T0position:148quality:45sequence:G248P85574RB9.T0position:129quality:44

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396346|allelePos=201|len=401|taxid=9606|alleles='C/G'|mol=Genomic
 AGCAGCCCCA GGATGGGTGA TGCTGATCTG GGGCCAGGCC CGACCTCGCA GAGAAAGAGG
 GGACACAGAC GGGGCCGGGA TTGAAAAGTG AGCGGCCATT GTCCAGGCAG GGGATAGAGC
 ACAGGTGAAG ACGCTTGGGT GTGAAGGGCA TGGAGGTTTT GGGGAAGCAA AGGGCCCCTG
 AGGCTGGGCT ATAGGGCAGG
 S
 GGAAGCAAGC AAGGGGCAGA CCAAGACCTC CCCCCGCCGG TCTTGGTGGA AAGGCCTGGA
 CTTCGTTCTG TCCACCCCTG CCAGGTGGGG TGCAGTGTCA CTGCAGCTCC CGCCCCGTCC
 CTGAGTCCTC CTCACCCCAT CCCCCAGGCA AGAAGCGTTG TTCCTTCTTG GTGACCTGGG
 CACAATGTAC AGCCTTTGGC

  Submitted Frequency for ss6396346 back to top
There is no frequency submission for ss6396346.


  dbSNP summary of Genotypes for ss6396346 back to top
No sufficient data to compute Hardy-weinberg probability for ss6396346.


  Submitted individual genotype for ss6396346 back to top
There is no individual genotype data for ss6396346.