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Submitted SNP(ss) Details: ss6396348           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_181995
RefSNP(rs#)rs2788089
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P87279FA4.T0position:375quality:51sequence:G248P86637RC12.T0position:-181quality:49

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396348|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 ctgcctcagc ctcccaaagt gctaggatta caggcatgag ccaccatgac tggccCTGCA
 AATATTTCTC TATATAGCaa caaacttaaa aaattttaat catttatagt agcatcaaaa
 atatcaaatg ccgagtaatg aatcttgtga aaggcaggca aaacctcatc acagaaaaat
 agagaccttc agagacatta
 R
 agaaaacaga agtaaatcaa ggaataccat atttatagat tgaaaaaacc aattaggtca
 agttgtcaat cctttacaga ttgatttgta gcgttaatac aatcctaatc aaaatcctgt
 atggttttcc atgaaaactt acaggctaat ttttaaagtt atatgaaaaa tcaatgcatt
 tggaggagtc aaTTCATTCT

  Submitted Frequency for ss6396348 back to top
There is no frequency submission for ss6396348.


  dbSNP summary of Genotypes for ss6396348 back to top
No sufficient data to compute Hardy-weinberg probability for ss6396348.


  Submitted individual genotype for ss6396348 back to top
There is no individual genotype data for ss6396348.