Submitted SNP(ss) Details: ss640437

Submitted SNP(ss) Details: ss640437

Submitter
Handle	SC_JCM
Submitter SNP ID	AC017067.3_115759
RefSNP(rs#)	rs471095
Submitted Batch ID	19-JUL-2000b
Submitted Date	Jul 27, 2000
Publication Cited	[1] Clone overlap SNPs detected from the public human 06-July-2000 draft sequence
First entry to dbSNP	Jul 27 2000 12:00:00:000AM

Resource Links
GenBank Accession	AC017067 AL356116
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	Overlap_SNPs_by_SsahaSNP
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/T
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
seqversion:AC017067.3position:115759unfin_quality:90seqversion:AL356116.2position:137351unfin_quality:27

Fasta sequence (Legend)

 TATGTTATAT AGAAATGAGC TATGGACAAG GGTTATATAG GGAAATCTTT CACATTACTC
 GCAGTAAGAA AGTCAAGCAG TTGATCTTTC ACAATGGCAT GTAATTCTGG CTGAAAGAAA
 TGAGGGCCTA TTTTTTGCCT CAATATTTTC TTGCAAAACA GGGATATATT ATTCCAATTT
 GTTGCAGTAG GCAAAATTAA
 W
 TTGGTAAGAG TTATTTCTTG GACTCTGTTT CTATTTTATC TGCTACTGAA TCATTTAATT
 CATTATTTTA TACTTAATCA GATTTTAGCT CCTAGATTAT TGGGCTTTAA ACTTTTAAGA
 GTTCTTATTT TTTCTCCTTA TTAAAAACCT TGGCATGTTA CCAGCACACT ACATAAAAGA
 GGGCCATAGC AGCGCTCTCC

Submitted Frequency for ss640437

There is no frequency submission for ss640437.

dbSNP summary of Genotypes for ss640437

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
Caucasian	22	22	A=0.54545456	T=0.45454547	A/T=0.36363637 A/A=0.36363637 T/T=0.27272728	Pr(chiSq=0.782,df=1) =0.403	Genotype Freq.
PDpanel	44	44	T=0.65909094	A=0.34090909	T/T=0.45454547 A/T=0.40909091 A/A=0.13636364	Pr(chiSq=0.177,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss640437

There is no individual genotype data for ss640437.

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