| Submitter | | Handle | AFFY | | Submitter SNP ID | SNP_A-1780299 | | RefSNP(rs#) | rs152454 | | Submitted Batch ID | Mapping250K_StyTEST | | Submitted Date | May 10, 2010 | | Publication Cited | N.D. | | First entry to dbSNP | May 10 2010 12:00:00:000AM |
| | Resource Links | | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | SNP_A-1780299 |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | GENECHIP | | Ascertainment Samplesize | 270 | | Population | N.D. |
| | Allele | | Observed Allele | C/T | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | N.D. |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | population count: 4 | | Genotype Submission | N.D. | | Haplotype | N.D. |
|
>gnl|dbSNP|ss66036189|allelePos=17|len=33|taxid=9606|alleles='C/T'|mol=Genomic GGATAAATTG CTTTCA
Y
GATTAGCTCA CCTTCT
There is no frequency submission for ss66036189.
Population ID
-Class | Total
Sample
(2N) | Founder
(2N) | Major
Allele
Freq. | Minor
Allele
Freq. | Genotype
Freq. | HWE Goodness of Fit | Data
Source | | HapMap-CEU | 118 | 118 | T=0.92372882
| C=0.07627118 | T/T=0.84745765
C/T=0.15254237
| Pr(chiSq=0.059,df=1)
=1.000 | Genotype
Freq. | HapMap-HCB
- EAST ASIA | 90 | 90 | T=0.68888891
| C=0.31111112 | C/T=0.48888889
T/T=0.44444445
C/C=0.06666667
| Pr(chiSq=0.889,df=1)
=0.371 | Genotype
Freq. | | HapMap-JPT | 90 | 90 | T=0.78888887
| C=0.21111111 | T/T=0.64444447
C/T=0.28888890
C/C=0.06666667
| Pr(chiSq=0.792,df=1)
=0.403 | Genotype
Freq. | | HapMap-YRI | 120 | 120 | T=0.94166666
| C=0.05833333 | T/T=0.88333333
C/T=0.11666667
| Pr(chiSq=0.026,df=1)
=1.000 | Genotype
Freq. |
There is no individual genotype data for ss66036189.
|
