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Submitted SNP(ss) Details: ss68756305           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP06802847
RefSNP(rs#)rs2980319
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756305|allelePos=65|len=129|taxid=9606|alleles='A/T'|mol=Genomic
 GGCAAAGCTC TCAGCATTGT GAGCCTCTGT TTTCTACTCT GTAAAGGAGG
 CATGAATATC TACA
 W
 CATCAGTTTG CCAT
 GAGTATTGAA AAATAATGTC TTAGAAGCAC AGGGCAGAGC CTGGCATGTA

  Submitted Frequency for ss68756305 back to top
There is no frequency submission for ss68756305.


  dbSNP summary of Genotypes for ss68756305 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120T=0.87500000
A=0.12500000T/T=0.75000000
A/T=0.25000000
Pr(chiSq=0.287,df=1)
=0.655
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090T=0.89999998
A=0.10000000T/T=0.80000001
A/T=0.20000000
Pr(chiSq=0.106,df=1)
=0.752
Genotype
Freq.
HapMap-JPT9090T=0.86666667
A=0.13333334T/T=0.73333335
A/T=0.26666668
Pr(chiSq=0.265,df=1)
=0.655
Genotype
Freq.
HapMap-YRI120120A=0.61666667
T=0.38333333A/A=0.43333334
A/T=0.36666667
T/T=0.20000000
Pr(chiSq=3.022,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss68756305 back to top
There is no individual genotype data for ss68756305.